fbergmann / harmony_scripts

Utility scripts written during HARMONY 2021
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Check for 'miriam:unknown' in annotations #6

Open luciansmith opened 3 years ago

luciansmith commented 3 years ago

I am going to go out on a limb and say that annotations that include "miriam:unknown" in them (currently present in 17 biomodels) are incorrect.

Some examples: BIOMD0000000724/Theinmozhi_2018.xml: BIOMD0000000932/Garde2020.xml:

Clearly there's some process that is creating these, so it would be helpful if that process could be fixed, but in general, the script can check for this.

(Copasi already notices that it doesn't know what's up with these annotations, but I guess its warnings aren't being seen?)