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fbreitwieser
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pavian
🌈 Interactive analysis of metagenomics data
https://doi.org/10.1093/bioinformatics/btz715
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Alignment viewer: download genomes for alignment fails with "more columns than column names"
#121
dstrike234
opened
5 days ago
0
Way to customize colors for the Sankey plot
#120
endixk
opened
1 month ago
1
Exporting `get_pileup()`
#119
mikemc
opened
1 month ago
0
Problems with installing package pavian
#118
MeCaro1
opened
3 months ago
0
Thickness of the lines in the sankey plot
#117
evolbeginner
opened
5 months ago
0
sankey vizualization
#116
Yogesh1-11
opened
6 months ago
1
16S display of Kraken2 and Bracken reports
#115
ARW-UBT
opened
7 months ago
0
Pavian with amplicon sequencing data
#114
slambrechts
opened
8 months ago
0
Is there a way to share the generated interactive pavian output
#113
alanxelena
opened
9 months ago
1
Tutorial
#112
FA387
opened
10 months ago
1
Data privacy
#111
gryphon-98
opened
11 months ago
1
pavian crash with example data
#110
ArmandBester
opened
1 year ago
9
how
#109
timeresistance1996
closed
9 months ago
3
kaiju to pavian
#108
dnlrxn
opened
1 year ago
2
Trouble visualising kraken2 output
#107
archanamadhav
opened
1 year ago
4
Error in &&: 'length = 29' in coercion to 'logical(1)
#106
artiman16
closed
1 year ago
3
Create FYP barcode 3
#105
makaleacooney
closed
1 year ago
0
Display % not reads on Sankey?
#104
DntBScrdDv
opened
1 year ago
0
HTML Output cuts off text + Sankey settings
#103
DntBScrdDv
opened
1 year ago
0
generate Sankey diagram for gtdbtk taxonomy output report
#102
saras224
opened
1 year ago
0
Sample - Sankey Visualization - Filter taxa - Case insensitive search
#101
bejo-dionnez
opened
1 year ago
0
Pavian not working with kraken2 reports
#100
icbarron
closed
1 year ago
1
Error reading Metaphlan 4 format
#99
sterrettJD
closed
9 months ago
2
Add badge where you can run Pavian on a public cloud
#98
bgruening
opened
1 year ago
0
Convert Emu results to be compatible with pavian
#97
ArmandBester
opened
1 year ago
0
Archaeal reads are not tabulated by Pavian
#96
Rohit-Satyam
opened
1 year ago
0
output for pdf
#95
neptuneyt
opened
1 year ago
0
Set runApp parameters in docker
#94
simone-pignotti
opened
1 year ago
0
Customisable summary table
#93
kdm9
opened
1 year ago
0
Maximum File size exceeded
#92
lborcard
opened
1 year ago
1
Kraken2: The following files did not conform the report format
#91
sum732
closed
1 year ago
1
Exporting to .csv or copying rows
#90
jquxch1
opened
2 years ago
0
Explanation: Clade counts vs Taxon counts
#89
HitMonk
opened
2 years ago
0
What's the criteria to select Number of taxa at each level pavian?
#88
B-1991-ing
opened
2 years ago
0
Making sankey figure for classification outputs from GTDB-Tk
#87
B-1991-ing
opened
2 years ago
2
Alignment file loading error
#86
jhnath21
opened
2 years ago
3
Extra percent character added when changing table sort
#85
alexomics
opened
2 years ago
0
Is Pavian dependent on NCBI taxonomy (taxdump files from NCBI)?
#84
ilnamkang
opened
2 years ago
0
get_quosure function
#83
MortenEneberg
opened
2 years ago
0
Unable to upload bam and bam.bai file for alignment viewer
#82
hddesai
opened
2 years ago
0
Pavian removes some species from kraken2 reports.
#81
humbleflowers
opened
2 years ago
0
Different counts obtained with Pavaian and Krona
#80
capfz200
opened
2 years ago
0
cannot open URL 'https://api.github.com/repos/fbreitwieser/pavian/tarball/HEAD'
#79
termithorbor
opened
3 years ago
1
Sankey results off screen below legend
#78
lindsrowd
opened
3 years ago
1
How to configure docker mode pavian with pavian::runApp(maxUploadSize="512M")
#77
Gray-Tu
closed
3 years ago
2
Errors when comparing across samples
#76
pieterjanvc
opened
3 years ago
4
Metaphlan3 report upload fails
#75
pieterjanvc
closed
3 years ago
1
kraken report file not working
#74
Peter-Kille
closed
3 years ago
3
Pavian crashes when uploading 64 Kraken2 reports
#73
christophevandijck
opened
3 years ago
6
fix for updated bioconductor and added shinyapps.io help to README.md
#72
timp0
closed
3 years ago
0
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