Parameter strings - Githubissues

fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

BSD 3-Clause "New" or "Revised" License

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Closed fedarko closed 2 years ago

fedarko commented 2 years ago

[x] Support arbitrary parameter strings for minimap2 in align (#21)
[x] Support arbitrary parameter strings for LJA in smooth assemble
[x] Add note to README about how using shell=True carries with it the risk of shell injection if you are hosting strainFlye on a server that accepts public inputs