Allow user to (optionally) pass diversity indices to smooth create, to provide average coverages

fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

BSD 3-Clause "New" or "Revised" License

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Allow user to (optionally) pass diversity indices to smooth create, to provide average coverages #41

Closed fedarko closed 2 years ago

fedarko commented 2 years ago

Computing average coverages is slow, so allowing users to skip it is ideal. Can keep the current functionality as a backup, in case no diversity indices are passed. (And this isn't even required unless --virtual-reads is specified.)

fedarko commented 2 years ago

This is done now!