Modify hotspot command to ignore features on non-BCF contigs?

fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

BSD 3-Clause "New" or "Revised" License

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Modify hotspot command to ignore features on non-BCF contigs? #42

Closed fedarko closed 2 years ago

fedarko commented 2 years ago

For example, if the user has been working with a subset of contigs in a dataset, but they have gene predictions for all contigs. Currently, they'd have to filter the GFF3 file themselves. It'd be nice to not require that.