Close BAM files after every command / test that loads them

fedarko / strainFlye

Pipeline for analyzing (rare) mutations in metagenome-assembled genomes

BSD 3-Clause "New" or "Revised" License

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Close BAM files after every command / test that loads them #59

Open fedarko opened 1 year ago

fedarko commented 1 year ago

Currently, only align_utils takes care of this. It's unclear to me if we need to explicitly close AlignmentFiles after loading them, but I guess it couldn't hurt to enforce this throughout the pipeline.