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federicomarini / GeneTonic

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
https://federicomarini.github.io/GeneTonic
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bg_ids datatype and creation #39

Closed DaniBlumstein closed 2 years ago

DaniBlumstein commented 2 years ago

Hi I'm working on using your package on my own data but I'm running into an issue with the bg_ids object. My dds object and res object look just like the one in the example but when I run my version of res_macrophage_IFNg_vs_naive$SYMBOL <- rowData(dds_macrophage)$SYMBOL I only get the symbols back

Thanks! Dani

federicomarini commented 2 years ago

Assuming this one is solved on itself?

Anyway: if you would need the (ENSEMBL) identifiers, these are simply the rownames of the dds object