Recommended workflow to integrate onavg in a neuroimaging pipeline

[sina-mansour]

Hi,

First of all, thanks so much for openly providing these standard onavg surface templates for future use.

Checking the files on the repository, I wasn't able to find a clear explanation of how this resource can be used in future work. Namely, assuming I have already performed FreesSurfer processing (i.e. recon-all) and am interested to use the onavg surface for my study, how can I transform/register maps to the onavg? Are there any resources (e.g. tutorials/documentation) that details this?

Many thanks, Sina

[feilong]

Hi Sina,

Thank you for your interest in our work. Here's the tutorial of using onavg with FreeSurfer: https://feilong.github.io/tpl-onavg/how_to_use/how_to_use_w_freesurfer.html

If you run the recon-all through fMRIPrep, you might also be interested in the code we wrote to resample to onavg based on fMRIPrep output: https://feilong.github.io/tpl-onavg/how_to_use/how_to_use_w_python.html

Best, Feilong