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fgvieira
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ngsLD
Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework
GNU General Public License v2.0
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thread 'main' panicked at src/graph.rs:83:42:
#56
melisphdassociation
opened
1 month ago
3
> Header found! Skipping line...
#55
Banthandor
opened
3 months ago
16
Output files too large.
#54
JdrrCosta
closed
3 months ago
4
fit_LDdecay.R error: 'to' must be a finite number
#53
fuesseler
closed
6 months ago
1
ANGSD VCF reformatting
#52
NicMAlexandre
closed
9 months ago
8
How to get p values for significant LD?
#51
beausoleilmo
opened
1 year ago
5
Error in type.convert.default(data[[i]], as.is = as.is[i], dec = dec, : long vectors not supported yet: ../../../include/Rinlinedfuns.h:537
#50
jcaccavo
opened
1 year ago
4
Error in open.connection(file, "rt") : cannot open the connection
#49
jcaccavo
closed
1 year ago
2
Download problems and error when I run the program.
#48
Tannervanorden
closed
1 year ago
8
ngsLD unable to read genotype input file
#47
BKrek89
closed
1 year ago
4
install: fatal error: gsl/gsl_rng.h: No such file or directory
#46
RachelxGray
closed
10 months ago
3
.ld file format issue. two additional columns
#45
jmhallas
opened
1 year ago
5
LD values are NA for r2 EM and D prime EM
#44
aguilar-gomez
opened
1 year ago
5
Value Error in prune_ngsLD.py
#43
TrishikaS
opened
1 year ago
16
Hardcoded BUFF_LEN with larger numbers of samples
#42
russcd
closed
1 year ago
0
prune_ngsLD.py error
#41
Andrew-N-Black
opened
1 year ago
1
program killed
#40
clydeandforth
closed
1 year ago
2
Ideas for speeding up prune_graph.pl
#39
jtoy7
opened
1 year ago
20
ERROR: [read_dist] invalid distance between adjacent sites! with multiple contigs
#38
beausoleilmo
closed
1 year ago
10
`LD_blocks.sh` is not functional
#37
cbird808
opened
2 years ago
1
Difference between python and perl LD pruning scripts
#36
dmacguigan
closed
2 years ago
3
Reading data from file... Killed
#35
mayroberts
closed
2 years ago
1
missing data affects `--min_maf`
#34
cbird808
closed
2 years ago
1
clarification of options
#33
cbird808
closed
2 years ago
2
missing GL/GP data
#32
cbird808
closed
2 years ago
2
Adding new pruning script with faster run times
#31
zjnolen
closed
2 years ago
11
LD Pruning - Reduce Memory, Computing Time, and Output file size
#30
NicMAlexandre
closed
2 years ago
9
LD pruning issue
#29
TrishikaS
closed
1 year ago
13
[read_geno] cannot read GZip GENO file
#28
katcatalano
closed
2 years ago
2
Example GL File
#27
gaxyz
closed
2 years ago
3
'cannot allocate more memory!' error
#26
andrewSharo
closed
2 years ago
1
Does this pruning method seem appropriate? Plus, uncertainty about pruning beagle format
#25
zjnolen
closed
2 years ago
5
LD decay plot from multiple .ld files (different linkage groups)
#24
avnitkr
opened
2 years ago
1
ERROR: [read_dist] invalid distance between adjacent sites!
#23
avnitkr
closed
3 years ago
6
how to increase the threads used in prune_graph.pl
#22
xilingsabatelli
closed
3 years ago
1
ngsld pruning running forever
#21
HomereAMK
closed
3 years ago
1
ngsLD sometimes hangs indefinitely
#20
James-S-Santangelo
opened
3 years ago
8
Invalid entry in input when using prune_graph.pl
#19
James-S-Santangelo
closed
3 years ago
3
ngsLD output contains improperly formatted lines on Mac
#18
TeresaPegan
closed
3 years ago
8
LD between chr/contig names
#17
anne-laureferchaud
closed
4 years ago
8
ERROR: [read_geno] wrong GENO file format. Less fields than expected!
#16
alissaseverson
closed
4 years ago
2
ngsLD usage
#15
elizeng
closed
4 years ago
5
compilation error with ubuntu 14.04
#14
hrwang
closed
4 years ago
2
Header found! Skipping line...
#13
debjyoti88
closed
4 years ago
1
Installation error: fatal error: gsl/gsl_rng.h: No such file or directory
#12
debjyoti88
closed
4 years ago
4
.geno files not accepted.
#11
carlos-sarabia
closed
4 years ago
6
ngsLD removed a large number of linked sites
#10
biozzq
closed
4 years ago
8
Is the format of input geno file same with the ngsDist?
#9
biozzq
closed
4 years ago
1
Meaning of --fit_level flag in fit_LDdecay.R script
#8
albinap
closed
5 years ago
2
invalid distance between adjacent sites
#7
etwatson
closed
5 years ago
3
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