flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

https://caiman.readthedocs.io

GNU General Public License v2.0

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nb=0 #1172

Open j-friedrich opened 1 year ago

j-friedrich commented 1 year ago

Description

Enable to run CNMF without background components (nb=0) for cases when the background has already been removed in a pre-processing step using other means. Fixes #1068. (and a deprecation mentioned in #1130)

Type of change

[x] Bug fix (non-breaking change which fixes an issue)
[x] New feature (non-breaking change which adds functionality)

Has your PR been tested?

Yes python caimanmanager.py test and python caimanmanager.py demotest

EricThomson commented 1 year ago

Sounds very cool -- thanks! Will review in the next day.

pgunn commented 1 year ago

Generally looks good