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flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
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Document file formats people can bring to caiman #1217

Closed pgunn closed 1 year ago

pgunn commented 1 year ago

This is meant to be a guide on what file formats Caiman can work with, and to some extent how to prep data for use with Caiman.

It needs work (Eric, Kushal, please join me in working on the branch to get this thing up to snuff). Some sections explicitly note that they're incomplete. We should add stuff on converters.

We should have documented this ages ago. Still, let's not let that be an excuse not to document it now.

EricThomson commented 1 year ago

Great idea, will probably not be able to do much with this before workshop next week, but after that I will have a surplus of time!

pgunn commented 1 year ago

I'm thinking of landing this soon; we can do more work on it later.