Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
Changes caiman.base.movies to work with multiseries tifffiles and nd2 files
Changed caiman.motion_correction to do motion correction with lazy loading and sve files into tiff format
Opening multiseries tiff files
Created _load_all_purposetiff function to open multiseries and multi page tiff files.
Changed load and _loaditer functions to allow multiseries tiff files and .nds (Nikon format) files.
Lazy loading motion correction
Created _motion_correction_onlinelazyLoading function to do online motion correction frame by frame. This allows to work with recordings on the go. This function saves files in the tiff format and also saves the templates used for motion correction
Created a function to optimize the gSig_filt parameter.
Changed the multi files motion correction function to allow multiple save names.
Description
Opening multiseries tiff files
Lazy loading motion correction