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flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
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way to executing demo notebook in bulk #1397

Closed kazugorira closed 2 months ago

kazugorira commented 2 months ago

Hello

I want to exectute demo notebooks in bulk. Do you plan to add such a feature in the future?

pgunn commented 2 months ago

Can you help me understand what the purpose of this would be?

kazugorira commented 2 months ago

Sorry for the lack of words. I want to process data from multiple trials at once.

pgunn commented 2 months ago

Ah, I see.

You probably should look at the commandline demos (under demos/general instead of demos/notebooks) and use those as a basis for what you need to do. You can modify them as needed to save whatever you want to save; they're pretty friendly to running in bulk as you describe.

kazugorira commented 2 months ago

Thank you!