flatironinstitute CaImAn issues

flatironinstitute / CaImAn

Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.

https://caiman.readthedocs.io

GNU General Public License v2.0

639 stars 370 forks source link

issues

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Input Array Dimension for concatenation size error

#1364 kg3354 opened 5 months ago
12
Fix removeBL for 3D movies

#1363 ethanbb closed 4 months ago
10
bas_nonneg=False when p=0

#1361 wienecke opened 5 months ago
0
linux run result file not readable in windows gui

#1360 lsookie opened 5 months ago
5
dev->main for release 1.11.1

#1358 pgunn closed 5 months ago
0
caimanmanager detect editable

#1357 pgunn closed 5 months ago
0
pip install -e is broken

#1356 pgunn closed 5 months ago
4
Breaking: Upstream tensorflow 2.16 breaks caiman

#1355 pgunn closed 5 months ago
3
Tracking issue: Caiman and numpy 2.0

#1354 pgunn opened 6 months ago
1
Fix medw loading as b'NoneType' instead of None

#1353 ethanbb closed 6 months ago
1
Fix map_async call on DirectView causing error

#1350 ethanbb closed 6 months ago
1
map_async causing issue when doing CNMF using ipyparallel

#1348 ethanbb closed 6 months ago
5
Timeout

#1347 fdeguire03 closed 6 months ago
1
typo of os.environment

#1345 rob-the-bot closed 6 months ago
0
RTD is broken

#1344 pgunn closed 6 months ago
4
Dev -> Main for release of 1.11.0

#1342 pgunn closed 6 months ago
0
caimanmanager: don't copy __pycache__ dirs out of the library bundle

#1341 pgunn closed 6 months ago
0
__pycache__ in caiman_data?

#1340 pgunn closed 6 months ago
3
Obsolete dependency python-spams

#1339 pgunn closed 6 months ago
3
Kernel dying during motion correction

#1338 Mraymon5 closed 6 months ago
19
fix mat support

#1337 pgunn closed 7 months ago
4
Matlab support broken due to changes in scipy

#1336 pgunn closed 7 months ago
9
environment.yml: handle variant and newer condas better

#1334 pgunn closed 7 months ago
2
The error "TypeError: init() got an unexpected keyword argument 'normalize'" occurred in the line "cnm2 = cnm.refit(images, dview=dview)" in the demo_pipeline.

#1333 lsookie closed 7 months ago
3
CNN model cannot be loaded with latest `keras` and `tensorflow`

#1332 kushalkolar opened 7 months ago
10
Motion correction with lazy loading and open multiseries tifffile

#1330 RuiOSilva closed 7 months ago
0
Simplify .sbx loading & improve space efficiency; explicitly close memmapped files

#1329 ethanbb closed 7 months ago
5
Fixes infinite values in SNR

#1328 pseudomanu closed 5 months ago
9
Extensions starts with a dot

#1326 marberi closed 7 months ago
8
Back to older version of Caiman

#1324 zhouyi0812 closed 7 months ago
1
dev -> main for release again

#1322 pgunn closed 7 months ago
0
Dev->main for release

#1321 pgunn closed 7 months ago
0
dev->main for release (bugfix on last release)

#1320 pgunn closed 7 months ago
0
new sbx tests have issues on windows

#1319 pgunn closed 7 months ago
8
Merge to main for 1.10.5 release

#1318 pgunn closed 7 months ago
0
SBX utils: ensure correct photometric setting for TIFs and allow extracting single plane

#1316 ethanbb closed 7 months ago
1
CNMFParams: only nag people once for deprecation

#1315 pgunn closed 7 months ago
0
Fix incompatibilities in test_sbx for python <3.11

#1314 ethanbb closed 7 months ago
5
Test ci fixes

#1313 pgunn closed 7 months ago
1
CI is broken, Windows-WSL (and some other Linux) users need some extra systems packages

#1312 pgunn closed 7 months ago
16
Scanbox format updates

#1311 ethanbb closed 7 months ago
7
Demotest gives KeyError in cnmf/initialization.py

#1310 ethanbb closed 7 months ago
2
If it's possible to install caiman on another drive

#1309 zhouyi0812 closed 7 months ago
11
Can't set up caiman in Ubuntu of wsl windows11

#1308 Shuai-NY closed 8 months ago
5
'caimanmanerger' is not recognized as an internal or external command, operable program or batch file.

#1307 zhouyi0812 closed 8 months ago
5
Handle upcoming minor deprecations

#1306 EricThomson closed 7 months ago
0
Fix problem with using reloaded cnmf object

#1305 EricThomson closed 7 months ago
3
fix bug in correlation image calculation

#1304 EricThomson opened 8 months ago
1
Handle warnings about upcoming deprecations

#1303 EricThomson opened 8 months ago
5
Remove pylab imports

#1302 EricThomson closed 7 months ago
1

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