issues
search
flatironinstitute
/
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
639
stars
370
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
updated contributors doc
#1301
EricThomson
closed
8 months ago
2
Updated discussion of optimizations in cnmf demo
#1300
EricThomson
closed
8 months ago
1
Suggestion: remove SBX loading code and recommend using sbxreader instead
#1299
EricThomson
closed
6 months ago
27
Memory issue when running the cnmfe and estimates.F_dff
#1297
zhouyi0812
closed
8 months ago
6
How to work with large mmap files?
#1296
CanYing0913
opened
8 months ago
10
`base.movie.get_file_size()` gives a `NameError` in latest release with memmaps
#1295
kushalkolar
closed
8 months ago
3
Adding background components doesn't affect signal-to-noise ratio
#1293
LeoJuh
closed
9 months ago
1
dev -> master for 1.10.3 release
#1292
pgunn
closed
9 months ago
0
Move and rephrase info on caiman central
#1290
pgunn
closed
9 months ago
1
updated logo!
#1289
EricThomson
closed
9 months ago
0
Handle problem with dff auto-percentile calculation
#1288
EricThomson
closed
9 months ago
0
Suggestion to incorporate fastplotlib plots in the demos for interactive visualizations
#1287
JohnStout
closed
6 months ago
16
Sphinx/github docs tweaks to fix broken links
#1286
pgunn
closed
9 months ago
5
Trouble with detrend_df_f using non-CaImAn generated data.
#1285
GrowlingM1ke
closed
9 months ago
9
Evaluate_components cannot reshape array
#1284
warnerwarner
closed
8 months ago
1
Brittle Handling of failed `utils/stats.kde(...)` calls in `utils/stats.df_percentile`
#1283
CorbanSwain
closed
9 months ago
4
Fix scipy imports not to use (removed with 1.12) numpy reexports
#1282
pgunn
closed
9 months ago
0
`scipy` does not have a `histogram` method with this signature.
#1281
CorbanSwain
closed
9 months ago
9
Fix some sphinx issues
#1279
pgunn
closed
9 months ago
2
Docs issue: paths/links differ between Sphinx/RTD and local/Github rendering, leading to broken links
#1278
sshanbhag
closed
9 months ago
8
Dev no relative imports 2
#1277
pgunn
closed
9 months ago
0
"v cannot be empty"; error related convolution in Numpy?
#1276
masa6161
closed
9 months ago
2
'cnmf_refit.estimates.detrend_df_f' in demo_pipeline.ipynb requires tons of memory?
#1274
brian-arnold
closed
8 months ago
15
Notebooks:images live in images/ subdir next to notebooks
#1270
pgunn
closed
9 months ago
1
None type output from estimates.coordinates when running CNMF-E
#1269
JohnStout
closed
9 months ago
2
Installation Step is Hanging
#1268
CorbanSwain
closed
9 months ago
4
Dev to main for release patch 1.10.2
#1266
EricThomson
closed
9 months ago
0
Using view_quilt to define parameters
#1265
JohnStout
closed
8 months ago
5
Reloading cnmf object returns bytes rather than string
#1264
JohnStout
opened
9 months ago
8
Minor tweaks in notebooks for next 1.10 patch
#1263
EricThomson
closed
9 months ago
1
Should block ability to stumble into infinite while loop in percentile calculation for dff
#1262
EricThomson
closed
8 months ago
4
Fix links to images in notebooks
#1261
EricThomson
closed
9 months ago
0
dev->main for release 1.10.1
#1257
pgunn
closed
9 months ago
0
dev to main for release 1.10.0
#1254
EricThomson
closed
9 months ago
0
Readme update: explain how to work with demos
#1253
EricThomson
closed
9 months ago
0
fix estimates.play_movie so range var works
#1250
EricThomson
closed
10 months ago
1
Tracking the same ROIs for multiday recording of a single FOV
#1249
annahayoon
closed
9 months ago
5
Add option to save motion correction object
#1246
EricThomson
opened
10 months ago
0
Tiff File Dimension Error - Volpy Demo
#1245
SRoche14
closed
10 months ago
4
fix version string
#1243
pgunn
closed
11 months ago
0
How to do motion correction based on 2nd channel (red channel)?
#1240
nspiller
closed
10 months ago
6
WIP: CNMFParams overhaul
#1239
pgunn
closed
8 months ago
13
all these correlation functions
#1236
kushalkolar
opened
1 year ago
3
scipy.sparse.csc` namespace is deprecated.
#1235
EricThomson
closed
1 year ago
7
Remove slurm integration
#1233
pgunn
closed
1 year ago
1
Error when the input tif file consisting of 3D images
#1231
Anti-Involution
closed
10 months ago
2
Multi ci
#1230
bendichter
closed
1 year ago
1
add test workflow
#1228
bendichter
closed
1 year ago
10
openCV issue when playing the movie
#1227
andrestrocyte
opened
1 year ago
21
Add codespell: workflow, config and fix typos it finds
#1226
yarikoptic
closed
1 year ago
7
Previous
Next