issues
search
flatironinstitute
/
CaImAn
Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
https://caiman.readthedocs.io
GNU General Public License v2.0
639
stars
370
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
try to get CI working
#1225
bendichter
closed
1 year ago
15
caiman/cluster.py: remove some unused functions, fix mistake I made in refactor of setup_cluster()
#1224
pgunn
closed
1 year ago
0
movie save scales each frame: this introduces artifacts
#1222
EricThomson
closed
10 months ago
4
Design Discussion: Execution Context
#1221
pgunn
opened
1 year ago
5
Possible issue: clustering hurts motion correction
#1220
pgunn
closed
1 year ago
7
Downsampling cnmfe parameters in initialization
#1219
zhouyi0812
opened
1 year ago
4
Tracking: Easier support for externally defined neurons
#1218
pgunn
opened
1 year ago
0
Document file formats people can bring to caiman
#1217
pgunn
closed
1 year ago
2
WIP: document file formats
#1216
pgunn
closed
1 year ago
1
cluster.py:setup_cluster() - cleanups, make 'single' backend
#1214
pgunn
closed
1 year ago
1
Tracking: slurm cleanup
#1213
pgunn
closed
1 year ago
4
Tracking: setup_cluster and None
#1212
pgunn
closed
1 year ago
2
Refactor CLI demos to be applications
#1211
pgunn
closed
6 months ago
10
Volpy issue while running on HPC cluster - Tensor Flow and Qt platform plugin
#1209
carolinezphysics
closed
10 months ago
7
CNMFE notebook update
#1207
EricThomson
closed
10 months ago
2
Ways to improve nb_correlation_pnr
#1206
EricThomson
closed
10 months ago
4
Maximum Recursion Depth Reached Error
#1204
pgunn
closed
8 months ago
12
Switch from the z5py library to the zarr library
#1203
pgunn
closed
1 year ago
0
remove relative imports, generally clean up imports, remove dead code
#1202
pgunn
closed
9 months ago
4
Unable to us cnm.load() after cnm.save
#1200
zhouyi0812
closed
1 year ago
2
Caiman version on windows
#1199
noah-chongsiriwatana
closed
1 year ago
20
Error when saving OnACID object
#1198
StoyoKaramihalev
opened
1 year ago
4
get_file_size move
#1194
pgunn
closed
1 year ago
0
How to get cell x/y coordinates
#1193
zhouyi0812
closed
1 year ago
1
Movie save for avi in Windows doesn't work
#1192
EricThomson
opened
1 year ago
0
fix `scipy.ndimage` namespace deprecations and some invalid escape sequences in docstrings
#1191
kushalkolar
closed
1 year ago
0
Running caiman in google cloud
#1189
zhouyi0812
closed
10 months ago
30
estimates.detrend_df_f use_residuals keyword has no effect
#1188
EricThomson
closed
10 months ago
6
Issues with win installation. Cant install caimanmanager in env
#1187
Jorgenhoyer
closed
1 year ago
5
add check for rf and gSiz
#1186
kushalkolar
closed
1 year ago
0
Cryptic errors when CNMFE params are incompatible
#1185
kushalkolar
opened
1 year ago
10
Very high RAM usage in demo_pipeline.ipynb
#1184
salehtahini
closed
10 months ago
2
WIP: py39
#1183
pgunn
closed
1 year ago
0
dev->main for release 1.9.16
#1182
pgunn
closed
1 year ago
0
main->dev before dev->main
#1181
pgunn
closed
1 year ago
1
cell is sliding and how can I exclude it?
#1180
zhouyi0812
closed
10 months ago
3
Allows overriding of opencv default for avi files
#1179
pgunn
closed
1 year ago
1
Final poking and prodding before release
#1177
EricThomson
closed
1 year ago
2
pyproject / PEP-517
#1175
pgunn
closed
1 year ago
1
Bokeh plotting 2->3 fix second (final?) round
#1174
EricThomson
closed
1 year ago
3
nb=0
#1172
j-friedrich
opened
1 year ago
2
Issues with detrend_df_f
#1171
JLRomero12
closed
10 months ago
10
Adjust the CNMF-E parameters for widefield data on motion correction
#1170
zhouyi0812
closed
10 months ago
5
CNMF_Fit Error: Index Out of Bound
#1169
anlo5007
opened
1 year ago
1
Tracking issue: Investigate alternatives to z5py
#1168
pgunn
opened
1 year ago
1
Lazy arrays for CNMF
#1167
kushalkolar
closed
9 months ago
16
value error with cnm.estimates.nb_view_components
#1166
nprzrosas
closed
1 year ago
4
Issue when import the package for demo pipeline
#1165
zhouyi0812
closed
1 year ago
32
A bug in play_movie function of estimates.py
#1164
wsshen
closed
10 months ago
3
F-Dff Object Returns NoneType
#1163
CraigScullyClemmons
closed
1 year ago
2
Previous
Next