how do i save the corrected tiff stack image?

flatironinstitute / NoRMCorre

Matlab routines for online non-rigid motion correction of calcium imaging data

GNU General Public License v2.0

142 stars 88 forks source link

how do i save the corrected tiff stack image? #4

Closed m0userat25 closed 7 years ago

m0userat25 commented 7 years ago

i am sorry if this is a dumb question but i can't figure out how to save the non rigid corrected tiff stack.

epnev commented 7 years ago

@m0userat25 At the moment, the only way you can do this is by first running normcorre/normcorre_batch, and then saving the output as .tiff file using the saveastiff command.

epnev commented 7 years ago

normcorre_batch can now output the registered 2D data as a tiff stack, by choosing options.output_type = 'tif'. The name of the output file can be specified from options.tiff_filename