Closed m0userat25 closed 7 years ago
@m0userat25 At the moment, the only way you can do this is by first running normcorre/normcorre_batch, and then saving the output as .tiff file using the saveastiff
command.
normcorre_batch
can now output the registered 2D data as a tiff stack, by choosing options.output_type = 'tif'
. The name of the output file can be specified from options.tiff_filename
i am sorry if this is a dumb question but i can't figure out how to save the non rigid corrected tiff stack.