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fractal-analytics-platform / fractal-tasks-core

Main tasks for the Fractal analytics platform
https://fractal-analytics-platform.github.io/fractal-tasks-core/
BSD 3-Clause "New" or "Revised" License
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[auto] Update dependencies in `poetry.lock` #705

Closed tcompa closed 2 months ago

tcompa commented 2 months ago

Updated dependencies:

Updating dependencies
Resolving dependencies...

Package operations: 0 installs, 8 updates, 0 removals

  • Updating typing-extensions (4.10.0 -> 4.11.0)
  • Updating pydantic (1.10.14 -> 1.10.15)
  • Updating scipy (1.12.0 -> 1.13.0)
  • Updating dask (2024.3.1 -> 2024.4.1)
  • Updating array-api-compat (1.5.1 -> 1.6)
  • Updating h5py (3.10.0 -> 3.11.0)
  • Updating anndata (0.10.6 -> 0.10.7)
  • Updating zarr (2.17.1 -> 2.17.2)

Writing lock file

Outdated dependencies before PR:

anndata                        0.10.6     0.10.7    Annotated data.
array-api-compat               1.5.1      1.6       A wrapper around NumPy a...
build                      (!) 1.1.1      1.2.1     A simple, correct Python...
cellpose                   (!) 2.2.3      3.0.7     anatomical segmentation ...
cmake                      (!) 3.28.4     3.29.2    CMake is an open-source,...
contourpy                  (!) 1.2.0      1.2.1     Python library for calcu...
dask                           2024.3.1   2024.4.1  Parallel PyData with Tas...
docstring-parser               0.15       0.16      Parse Python docstrings ...
docutils                   (!) 0.20.1     0.21.1    Docutils -- Python Docum...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
filelock                   (!) 3.13.3     3.13.4    A platform independent f...
fonttools                  (!) 4.50.0     4.51.0    Tools to manipulate font...
h5py                           3.10.0     3.11.0    Read and write HDF5 file...
httpcore                   (!) 1.0.4      1.0.5     A minimal low-level HTTP...
idna                       (!) 3.6        3.7       Internationalized Domain...
ipykernel                  (!) 6.29.3     6.29.4    IPython Kernel for Jupyter
ipython                    (!) 8.18.1     8.23.0    IPython: Productive Inte...
json5                      (!) 0.9.24     0.9.25    A Python implementation ...
jupyter-lsp                (!) 2.2.4      2.2.5     Multi-Language Server We...
jupyter-server             (!) 2.13.0     2.14.0    The backend—i.e. core se...
jupyterlab                 (!) 4.1.5      4.1.6     JupyterLab computational...
jupyterlab-server          (!) 2.25.4     2.26.0    A set of server componen...
lazy-loader                (!) 0.3        0.4       lazy_loader
lit                        (!) 18.1.2     18.1.3    A Software Testing Tool
lxml                           4.9.4      5.2.1     Powerful and Pythonic XM...
matplotlib                 (!) 3.8.3      3.8.4     Python plotting package
matplotlib-inline          (!) 0.1.6      0.1.7     Inline Matplotlib backen...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
nbformat                   (!) 5.10.3     5.10.4    The Jupyter Notebook format
networkx                   (!) 3.2.1      3.3       Python package for creat...
numpydoc                   (!) 1.6.0      1.7.0     Sphinx extension to supp...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.0.0.312 cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
parso                      (!) 0.8.3      0.8.4     A Python Parser
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
psygnal                    (!) 0.10.2     0.11.0    Fast python callback/eve...
pycparser                  (!) 2.21       2.22      C parser in Python
pydantic                       1.10.14    2.7.0     Data validation and sett...
pyzmq                      (!) 25.1.2     26.0.0    Python bindings for 0MQ
scikit-image               (!) 0.22.0     0.23.1    Image processing in Python
scipy                          1.12.0     1.13.0    Fundamental algorithms f...
send2trash                 (!) 1.8.2      1.8.3     Send file to trash nativ...
setuptools                     69.2.0     69.5.1    Easily download, build, ...
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
stackview                  (!) 0.7.5      0.7.6     Interactive image stack ...
superqt                    (!) 0.6.2      0.6.3     Missing widgets and comp...
torch                      (!) 2.0.0      2.2.2     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.0     A language and compiler ...
typer                      (!) 0.10.0     0.12.3    Typer, build great CLIs....
typing-extensions              4.10.0     4.11.0    Backported and Experimen...
zarr                           2.17.1     2.17.2    An implementation of chu...

Outdated dependencies after PR:

cellpose                   (!) 2.2.3      3.0.7     anatomical segmentation ...
docstring-parser               0.15       0.16      Parse Python docstrings ...
docutils                   (!) 0.20.1     0.21.1    Docutils -- Python Docum...
executing                  (!) 0.10.0     2.0.1     Get the currently execut...
ipython                    (!) 8.18.1     8.23.0    IPython: Productive Inte...
lxml                           4.9.4      5.2.1     Powerful and Pythonic XM...
napari-skimage-regionprops (!) 0.8.2      0.10.1    A regionprops table widg...
networkx                   (!) 3.2.1      3.3       Python package for creat...
nvidia-cublas-cu11         (!) 11.10.3.66 11.11.3.6 CUBLAS native runtime li...
nvidia-cuda-cupti-cu11     (!) 11.7.101   11.8.87   CUDA profiling tools run...
nvidia-cuda-nvrtc-cu11     (!) 11.7.99    11.8.89   NVRTC native runtime lib...
nvidia-cuda-runtime-cu11   (!) 11.7.99    11.8.89   CUDA Runtime native Libr...
nvidia-cudnn-cu11          (!) 8.5.0.96   9.0.0.312 cuDNN runtime libraries
nvidia-curand-cu11         (!) 10.2.10.91 10.3.0.86 CURAND native runtime li...
nvidia-cusolver-cu11       (!) 11.4.0.1   11.4.1.48 CUDA solver native runti...
nvidia-cusparse-cu11       (!) 11.7.4.91  11.7.5.86 CUSPARSE native runtime ...
nvidia-nccl-cu11           (!) 2.14.3     2.21.5    NVIDIA Collective Commun...
nvidia-nvtx-cu11           (!) 11.7.91    11.8.86   NVIDIA Tools Extension
pandas                         1.5.3      2.2.2     Powerful data structures...
pooch                      (!) 1.8.0      1.8.1     "Pooch manages your Pyth...
pydantic                       1.10.15    2.7.0     Data validation and sett...
scikit-image               (!) 0.22.0     0.23.1    Image processing in Python
stack-data                 (!) 0.5.1      0.6.3     Extract data from python...
torch                      (!) 2.0.0      2.2.2     Tensors and Dynamic neur...
triton                     (!) 2.0.0      2.3.0     A language and compiler ...

Note: there may be dependencies in the table above which were not updated as part of this PR. The reason is they require manual updating due to the way they are pinned.

github-actions[bot] commented 2 months ago

Coverage report

This PR does not seem to contain any modification to coverable code.