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frankvogt / vcf2gwas

Python API for comprehensive GWAS analysis using GEMMA
GNU General Public License v3.0
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The process stop #40

Open nibrasissa opened 9 months ago

nibrasissa commented 9 months ago

(GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$ vcf2gwas -v input/merged_output.vcf.gz -pf input/phenodataready.csv -ap -lmm

vcf2gwas v0.8.9

Initialising..

Start time: Wed, 01 Nov 2023 19:06

Parsing arguments.. Genotype file: merged_output.vcf.gz Phenotype file(s): phenodataready.csv

Arguments parsed successfully

Preparing files

Checking phenodataready.csv.. Phenotype distribution(s) successfully plotted

Indexing VCF file.. VCF file already indexed (GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$