Open nibrasissa opened 9 months ago
(GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$ vcf2gwas -v input/merged_output.vcf.gz -pf input/phenodataready.csv -ap -lmm
vcf2gwas v0.8.9
Initialising..
Start time: Wed, 01 Nov 2023 19:06
Parsing arguments.. Genotype file: merged_output.vcf.gz Phenotype file(s): phenodataready.csv
Arguments parsed successfully
Preparing files
Checking phenodataready.csv.. Phenotype distribution(s) successfully plotted
Indexing VCF file.. VCF file already indexed (GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$
(GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$ vcf2gwas -v input/merged_output.vcf.gz -pf input/phenodataready.csv -ap -lmm
vcf2gwas v0.8.9
Initialising..
Start time: Wed, 01 Nov 2023 19:06
Parsing arguments.. Genotype file: merged_output.vcf.gz Phenotype file(s): phenodataready.csv
Arguments parsed successfully
Preparing files
Checking phenodataready.csv.. Phenotype distribution(s) successfully plotted
Indexing VCF file.. VCF file already indexed (GWAStest) nibras@LAPTOP-0RVF794N:~/vcf2gwas-main$