friend1ws / nanomonsv

SV detection tool for nanopore sequence reads
GNU General Public License v3.0
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definition of duplication #67

Open charliechen912ilovbash opened 1 month ago

charliechen912ilovbash commented 1 month ago

Hello, Could you simply explain how is duplication defined in NanomonSV output? Such as the difference betwenn duplication and insertion. Are the duplications dispersed, or tandem. And, is duplication detection only based on increased depth between two breakpoints, or also consider the sequence context between the two breakpoints.