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fritzsedlazeck / Spectre

Copy number caller for long read data including SNV utilization
MIT License
54 stars 3 forks source link

Modernise a bit. #32

Closed kylematoba closed 3 months ago

kylematoba commented 3 months ago

some updates I needed to make in order to run on newer numpy, packaging, etc.

philippesanio commented 3 months ago

Hi @kylematoba,

Thank you for submitting a pull request. However, this pull request seems to be tailored to a special use case of yours, for which I can not find a detailed documentation what these changes should address. Additionally, we want to avoid Pickle files, since they can introduce security risks. Hence, we are using SPC files for saving python objects, which are compressed JSON like structures.

If you want to see a feature in the future, feel free to suggest them in the issue section.

Best, Philippe