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galaxy-iuc / parsec

Access Galaxy at the speed of light with automatically generated BioBlend wrappers
Apache License 2.0
9 stars 9 forks source link

1.0.0 #9

Closed hexylena closed 7 years ago

hexylena commented 7 years ago

Missing Parameters

E.g. parsec history update_history was missing numerous params that are documented in help but are not in the argspec.

These are now fixed and function.

JSON Inputs

Previously json inputs did not function. Now they do. Additionally loading from stdin, file, or raw string is supported. E.g. all of these will function the same:

cat params.json | parsec jobs search_jobs -; # Stdin
parsec jobs search_jobs params.json; # Filename
parsec jobs search_jobs $(cat params.json); # String argument

Better Example

I've added an example where I create a history, run a tool, and the launch a workflow and check its status in the terminal.

Shinier Docs

CLI Simplification

moved commands into subcommands. No longer do you get this gigantic list of a thousand things you can do, instead just:

utvalg_069

and then the subcommands are further refined:

utvalg_070

hexylena commented 7 years ago

cc @natefoo or @jmchilton or someone? Would it be possible to get this package onto pypi under the same namespace as the rest of the Galaxy stuff (i.e. without leaving my repo access as a SPOF). I've added my deployment information for pypi using travis to automatically release tagged builds, but if one of y'all could just commit on top with the correct information. I use the travis CLI tool to configure this with travis setup pypi.

(Or should the IUC register a separate pypi account?)

hexylena commented 7 years ago

Merging this to dev, the merge to master will need to solve the bullets from the origin issue.

jmchilton commented 7 years ago

@erasche We need to get better about this ourselves - we don't have a Galaxy account or namespace as far as I am aware. Planemo is just me and Nate, ephemeris is just me. I'll try to add a few more people to all of "my projects".

hexylena commented 7 years ago

Oh, somehow I just assumed there was one. In that case I'll do the same and add y'all.