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Data intensive science for everyone.
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Galaxy takes too much time to provide the local host #17544

Open DuttaAnik opened 7 months ago

DuttaAnik commented 7 months ago

Hello, I am trying to install and run galaxy from my local computer. I installed it and successfully ran it to load the Galaxy. Then, I made the following changes one by one in the galaxy.yml file. I first put my admin user email and made myself an admin:

admin_users: xxxx@yahoo.com

Then, I added the following:

gravity:
  app_server: gunicorn
  gunicorn:
    # listening options
    bind: '127.0.0.1:4001'

Then, uncommented these commands:

message_box_visible: True
message_box_content: "Hey, at least I'm not a popup!"
message_box_class: info

After that, I ran sh run.sh which prints out all this info on the terminal:


==> /mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/log/celery-beat.log <==
[2024-02-26 12:26:30,150: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:26:30,163: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 12:31:30,082: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:31:30,099: INFO/MainProcess] Scheduler: Sending due task prune-history-audit-table (galaxy.prune_history_audit_table)
[2024-02-26 12:31:30,116: DEBUG/MainProcess] galaxy.prune_history_audit_table sent. id->acde67f7-b57e-45b8-adca-9a65db85f6f5
[2024-02-26 12:31:30,118: INFO/MainProcess] Scheduler: Sending due task cleanup-short-term-storage (galaxy.cleanup_short_term_storage)
[2024-02-26 12:31:30,131: DEBUG/MainProcess] galaxy.cleanup_short_term_storage sent. id->a1089ea1-3d8c-4b27-8990-bbcd836d1979
[2024-02-26 12:31:30,134: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 12:31:30,148: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->2531ccd5-b113-4956-ab3a-e30afee467db
[2024-02-26 12:31:30,148: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 12:36:30,145: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:36:30,153: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 12:41:30,120: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:41:30,137: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 12:41:30,343: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->389ba123-4b4f-4129-8c10-d2d649d4d44f
[2024-02-26 12:41:30,349: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 12:46:30,346: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:46:30,359: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 12:51:30,124: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:51:30,137: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 12:51:30,171: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->d4264841-3e67-4ec6-87b8-bb6361106e49
[2024-02-26 12:51:30,175: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.

==> /mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/log/celery.log <==
[2024-02-26 12:41:30,543: INFO/main] Task galaxy.clean_object_store_caches[389ba123-4b4f-4129-8c10-d2d649d4d44f] received
[2024-02-26 12:41:30,560: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', '389ba123-4b4f-4129-8c10-d2d649d4d44f', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '389ba123-4b4f-4129-8c10-d2d649d4d44f', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '389ba123-4b4f-4129-8c10-d2d649d4d44f', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '389ba123-4b4f-4129-8c10-d2d649d4d44f', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'c3c8b324-ad99-4d59-a237-9db07c4b2847'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': '389ba123-4b4f-4129-8c10-d2d649d4d44f', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 12:41:30,594: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (7.699 ms)
[2024-02-26 12:41:30,598: INFO/main] Task galaxy.clean_object_store_caches[389ba123-4b4f-4129-8c10-d2d649d4d44f] succeeded in 0.026042899999993097s: None
[2024-02-26 12:51:30,682: INFO/main] Task galaxy.clean_object_store_caches[d4264841-3e67-4ec6-87b8-bb6361106e49] received
[2024-02-26 12:51:30,682: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', 'd4264841-3e67-4ec6-87b8-bb6361106e49', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'd4264841-3e67-4ec6-87b8-bb6361106e49', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'd4264841-3e67-4ec6-87b8-bb6361106e49', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': 'd4264841-3e67-4ec6-87b8-bb6361106e49', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '4d49193a-df2e-4ee0-a2a6-02f4481d90a7'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': 'd4264841-3e67-4ec6-87b8-bb6361106e49', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 12:51:30,683: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.072 ms)
[2024-02-26 12:51:30,683: INFO/main] Task galaxy.clean_object_store_caches[d4264841-3e67-4ec6-87b8-bb6361106e49] succeeded in 0.00041899999996530823s: None
[2024-02-26 13:01:30,867: INFO/main] Task galaxy.clean_object_store_caches[422922b7-7d6f-4347-bfc2-aa1376fb3200] received
[2024-02-26 13:01:30,867: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', '422922b7-7d6f-4347-bfc2-aa1376fb3200', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '422922b7-7d6f-4347-bfc2-aa1376fb3200', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '422922b7-7d6f-4347-bfc2-aa1376fb3200', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL09', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '422922b7-7d6f-4347-bfc2-aa1376fb3200', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'cec814bd-0f8d-4d41-ada8-2957cb3397c8'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': '422922b7-7d6f-4347-bfc2-aa1376fb3200', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:01:30,869: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.123 ms)
[2024-02-26 13:01:30,869: INFO/main] Task galaxy.clean_object_store_caches[422922b7-7d6f-4347-bfc2-aa1376fb3200] succeeded in 0.0006209000002854737s: None

==> /mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/log/celery-beat.log <==
[2024-02-26 12:56:30,173: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 12:56:30,216: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 13:01:30,124: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 13:01:30,144: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 13:01:30,188: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->422922b7-7d6f-4347-bfc2-aa1376fb3200
[2024-02-26 13:01:30,193: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 13:06:30,191: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 13:06:30,210: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 13:11:30,133: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 13:11:30,177: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 13:11:30,224: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->aa01415f-03e4-47d6-a179-b77bdeb5bdf7
[2024-02-26 13:11:30,228: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 13:16:30,228: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 13:16:30,251: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.
[2024-02-26 13:21:30,167: DEBUG/MainProcess] beat: Synchronizing schedule...
[2024-02-26 13:21:30,193: INFO/MainProcess] Scheduler: Sending due task clean-object-store-caches (galaxy.clean_object_store_caches)
[2024-02-26 13:21:30,238: DEBUG/MainProcess] galaxy.clean_object_store_caches sent. id->6d144aba-56ad-4680-befb-56c16c3ea94f
[2024-02-26 13:21:30,239: DEBUG/MainProcess] beat: Waking up in 5.00 minutes.

==> /mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/log/celery.log <==
[2024-02-26 13:11:30,287: INFO/main] Task galaxy.clean_object_store_caches[aa01415f-03e4-47d6-a179-b77bdeb5bdf7] received
[2024-02-26 13:11:30,288: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', 'aa01415f-03e4-47d6-a179-b77bdeb5bdf7', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'aa01415f-03e4-47d6-a179-b77bdeb5bdf7', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'aa01415f-03e4-47d6-a179-b77bdeb5bdf7', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': 'aa01415f-03e4-47d6-a179-b77bdeb5bdf7', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': 'eae2dccf-090d-4cab-b818-5d82e4275e84'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': 'aa01415f-03e4-47d6-a179-b77bdeb5bdf7', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:11:30,290: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.158 ms)
[2024-02-26 13:11:30,290: INFO/main] Task galaxy.clean_object_store_caches[aa01415f-03e4-47d6-a179-b77bdeb5bdf7] succeeded in 0.000857900000482914s: None
[2024-02-26 13:21:30,981: INFO/main] Task galaxy.clean_object_store_caches[6d144aba-56ad-4680-befb-56c16c3ea94f] received
[2024-02-26 13:21:30,981: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', '6d144aba-56ad-4680-befb-56c16c3ea94f', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '93b68936-a2b4-4596-bd6b-ebcaea993bd3'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:21:30,983: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.156 ms)
[2024-02-26 13:21:30,984: INFO/main] Task galaxy.clean_object_store_caches[6d144aba-56ad-4680-befb-56c16c3ea94f] succeeded in 0.0008373000000574393s: None
[2024-02-26 13:21:31,048: INFO/main] Task galaxy.clean_object_store_caches[6d144aba-56ad-4680-befb-56c16c3ea94f] received
[2024-02-26 13:21:31,049: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', '6d144aba-56ad-4680-befb-56c16c3ea94f', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '93b68936-a2b4-4596-bd6b-ebcaea993bd3'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': '6d144aba-56ad-4680-befb-56c16c3ea94f', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:21:31,050: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.070 ms)
[2024-02-26 13:21:31,050: INFO/main] Task galaxy.clean_object_store_caches[6d144aba-56ad-4680-befb-56c16c3ea94f] succeeded in 0.0004360000002634479s: None
[2024-02-26 13:31:30,329: INFO/main] Task galaxy.prune_history_audit_table[6b6ac50e-ae76-44f8-a6ac-551b2f680d61] received
[2024-02-26 13:31:30,330: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.prune_history_audit_table', '6b6ac50e-ae76-44f8-a6ac-551b2f680d61', {'lang': 'py', 'task': 'galaxy.prune_history_audit_table', 'id': '6b6ac50e-ae76-44f8-a6ac-551b2f680d61', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': '6b6ac50e-ae76-44f8-a6ac-551b2f680d61', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': '6b6ac50e-ae76-44f8-a6ac-551b2f680d61', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '38be7e91-e48d-4aae-9131-543ac2517bae'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': '6b6ac50e-ae76-44f8-a6ac-551b2f680d61', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:31:30,404: INFO/main] Successfully executed Celery task prune_history_audit_table to pruning history audit table prune_history_audit_table to pruning history audit table (72.544 ms)
[2024-02-26 13:31:30,405: INFO/main] Task galaxy.prune_history_audit_table[6b6ac50e-ae76-44f8-a6ac-551b2f680d61] succeeded in 0.07433430000128283s: None
[2024-02-26 13:31:30,413: INFO/main] Task galaxy.cleanup_short_term_storage[e65eaadb-9adf-4784-8217-28d635fc918b] received
[2024-02-26 13:31:30,415: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.cleanup_short_term_storage', 'e65eaadb-9adf-4784-8217-28d635fc918b', {'lang': 'py', 'task': 'galaxy.cleanup_short_term_storage', 'id': 'e65eaadb-9adf-4784-8217-28d635fc918b', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e65eaadb-9adf-4784-8217-28d635fc918b', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': 'e65eaadb-9adf-4784-8217-28d635fc918b', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '8d42a6fa-3e93-41c5-a283-68293eefae4f'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': 'e65eaadb-9adf-4784-8217-28d635fc918b', 'hostname': 'celery@NL99', 'delivery_info':... kwargs:{})
[2024-02-26 13:31:30,426: INFO/main] Successfully executed Celery task cleanup_short_term_storage to clean up short term storage cleanup_short_term_storage to clean up short term storage (9.912 ms)
[2024-02-26 13:31:30,426: INFO/main] Task galaxy.cleanup_short_term_storage[e65eaadb-9adf-4784-8217-28d635fc918b] succeeded in 0.010212200000751182s: None
[2024-02-26 13:31:30,446: INFO/main] Task galaxy.clean_object_store_caches[e4492c4d-32b4-4e09-b268-4127e15148c9] received
[2024-02-26 13:31:30,446: DEBUG/main] TaskPool: Apply <function fast_trace_task at 0x7fd9fd8478b0> (args:('galaxy.clean_object_store_caches', 'e4492c4d-32b4-4e09-b268-4127e15148c9', {'lang': 'py', 'task': 'galaxy.clean_object_store_caches', 'id': 'e4492c4d-32b4-4e09-b268-4127e15148c9', 'shadow': None, 'eta': None, 'expires': None, 'group': None, 'group_index': None, 'retries': 0, 'timelimit': [None, None], 'root_id': 'e4492c4d-32b4-4e09-b268-4127e15148c9', 'parent_id': None, 'argsrepr': '()', 'kwargsrepr': '{}', 'origin': 'gen1305@NL99', 'ignore_result': False, 'replaced_task_nesting': 0, 'stamped_headers': None, 'stamps': {}, 'properties': {'correlation_id': 'e4492c4d-32b4-4e09-b268-4127e15148c9', 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'delivery_mode': 2, 'delivery_info': {'exchange': '', 'routing_key': 'galaxy.internal'}, 'priority': 0, 'body_encoding': 'base64', 'delivery_tag': '9e733f32-eec4-43a5-9df8-273879674c9b'}, 'reply_to': 'f5c37ac5-a5fe-3d54-a23a-60a109158a82', 'correlation_id': 'e4492c4d-32b4-4e09-b268-4127e15148c9', 'hostname': 'celery@NL99', 'delivery_info': {'exchange':... kwargs:{})
[2024-02-26 13:31:30,448: INFO/main] Successfully executed Celery task clean_object_store_caches to prune object store cache directories clean_object_store_caches to prune object store cache directories (0.652 ms)
[2024-02-26 13:31:30,448: INFO/main] Task galaxy.clean_object_store_caches[e4492c4d-32b4-4e09-b268-4127e15148c9] succeeded in 0.001466699999582488s: None

And this takes like 2-3 hrs on average every time I want to launch galaxy from my laptop. Could you please suggest what I can change to reduce the launching time?

Thank you.

dannon commented 7 months ago

The celery logs are just periodic tasks that happen once Galaxy is running -- can you share what's going on prior to those logs, or what it's doing during the long pause of startup time you're observing?

The very first dependency install (and client build potentially) can take a while, but that should only happen the very first time and not on every startup.

DuttaAnik commented 7 months ago

Hi @dannon thank you for the reply. Here are the initial logs and still it takes too much time just to provide the local host address.

Activating Conda environment: _galaxy_
WARNING: Your shell is not supported with Conda, attempting to use Conda env
         '_galaxy_' with manual environment setup. To avoid this
         message, use a supported shell or activate the environment before
         starting Galaxy.
Activating virtualenv at .venv
Requirement already satisfied: pip>=20.3 in ./.venv/lib/python3.8/site-packages (23.0.1)
Requirement already satisfied: wheel in ./.venv/lib/python3.8/site-packages (0.42.0)

[notice] A new release of pip is available: 23.0.1 -> 24.0
[notice] To update, run: pip install --upgrade pip
Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
Ignoring asynctest: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring billiard: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring cached-property: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring celery: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring colorama: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment
Ignoring kombu: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring numpy: markers 'python_version >= "3.7" and python_version < "3.8"' don't match your environment
Ignoring numpy: markers 'python_version >= "3.9" and python_version < "3.12"' don't match your environment
Ignoring pyreadline3: markers 'sys_platform == "win32" and python_version >= "3.8" and python_version < "3.12"' don't match your environment
Ignoring pyreadline: markers 'sys_platform == "win32" and python_version < "3.8" and python_version >= "3.7"' don't match your environment
Ignoring tzdata: markers 'python_version >= "3.7" and python_version < "3.12" and platform_system == "Windows"' don't match your environment
Requirement already satisfied: a2wsgi==1.7.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 1)) (1.7.0)
Requirement already satisfied: adal==1.2.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 2)) (1.2.7)
Requirement already satisfied: aiobotocore==2.4.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 3)) (2.4.2)
Requirement already satisfied: aiodataloader==0.4.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 4)) (0.4.0)
Requirement already satisfied: aiofiles==23.2.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 5)) (23.2.1)
Requirement already satisfied: aiohttp==3.8.6 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 6)) (3.8.6)
Requirement already satisfied: aioitertools==0.11.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 7)) (0.11.0)
Requirement already satisfied: aiosignal==1.3.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 8)) (1.3.1)
Requirement already satisfied: alembic==1.12.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 9)) (1.12.1)
Requirement already satisfied: amqp==5.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 10)) (5.2.0)
Requirement already satisfied: aniso8601==9.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 11)) (9.0.1)
Requirement already satisfied: anyio==3.7.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 12)) (3.7.1)
Requirement already satisfied: apispec==6.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 13)) (6.3.0)
Requirement already satisfied: appdirs==1.4.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 14)) (1.4.4)
Requirement already satisfied: arcp==0.2.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 15)) (0.2.1)
Requirement already satisfied: argcomplete==3.1.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 16)) (3.1.2)
Requirement already satisfied: async-timeout==4.0.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 17)) (4.0.3)
Requirement already satisfied: attmap==0.13.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 19)) (0.13.2)
Requirement already satisfied: attrs==23.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 20)) (23.1.0)
Requirement already satisfied: babel==2.13.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 21)) (2.13.1)
Requirement already satisfied: backports-zoneinfo==0.2.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 22)) (0.2.1)
Requirement already satisfied: bagit-profile==1.3.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 23)) (1.3.1)
Requirement already satisfied: bagit==1.8.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 24)) (1.8.1)
Requirement already satisfied: bcrypt==4.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 25)) (4.0.1)
Requirement already satisfied: bdbag==1.7.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 26)) (1.7.1)
Requirement already satisfied: beaker==1.12.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 27)) (1.12.1)
Requirement already satisfied: billiard==4.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 29)) (4.2.0)
Requirement already satisfied: bioblend==1.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 30)) (1.2.0)
Requirement already satisfied: bleach==6.0.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 31)) (6.0.0)
Requirement already satisfied: boltons==23.1.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 32)) (23.1.1)
Requirement already satisfied: boto==2.49.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 33)) (2.49.0)
Requirement already satisfied: botocore==1.27.59 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 34)) (1.27.59)
Requirement already satisfied: bx-python==0.10.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 35)) (0.10.0)
Requirement already satisfied: cachecontrol[filecache]==0.13.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 36)) (0.13.1)
Requirement already satisfied: celery==5.3.6 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 39)) (5.3.6)
Requirement already satisfied: certifi==2023.11.17 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 40)) (2023.11.17)
Requirement already satisfied: cffi==1.15.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 41)) (1.15.1)
Requirement already satisfied: charset-normalizer==3.3.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 42)) (3.3.2)
Requirement already satisfied: cheetah3==3.2.6.post1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 43)) (3.2.6.post1)
Requirement already satisfied: circus==0.18.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 44)) (0.18.0)
Requirement already satisfied: click-didyoumean==0.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 45)) (0.3.0)
Requirement already satisfied: click-plugins==1.1.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 46)) (1.1.1)
Requirement already satisfied: click-repl==0.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 47)) (0.3.0)
Requirement already satisfied: click==8.1.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 48)) (8.1.7)
Requirement already satisfied: cloudauthz==0.6.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 49)) (0.6.0)
Requirement already satisfied: cloudbridge==3.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 50)) (3.2.0)
Requirement already satisfied: coloredlogs==15.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 52)) (15.0.1)
Requirement already satisfied: conda-package-streaming==0.9.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 53)) (0.9.0)
Requirement already satisfied: cryptography==41.0.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 54)) (41.0.5)
Requirement already satisfied: cwl-upgrader==1.2.8 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 55)) (1.2.8)
Requirement already satisfied: cwl-utils==0.28 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 56)) (0.28)
Requirement already satisfied: cwltool==3.1.20221109155812 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 57)) (3.1.20221109155812)
Requirement already satisfied: decorator==5.1.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 58)) (5.1.1)
Requirement already satisfied: defusedxml==0.7.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 59)) (0.7.1)
Requirement already satisfied: deprecation==2.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 60)) (2.1.0)
Requirement already satisfied: dictobj==0.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 61)) (0.4)
Requirement already satisfied: dnspython==2.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 62)) (2.3.0)
Requirement already satisfied: docopt==0.6.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 63)) (0.6.2)
Requirement already satisfied: docutils==0.18.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 64)) (0.18.1)
Requirement already satisfied: dparse==0.6.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 65)) (0.6.3)
Requirement already satisfied: ecdsa==0.18.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 66)) (0.18.0)
Requirement already satisfied: edam-ontology==1.25.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 67)) (1.25.2)
Requirement already satisfied: email-validator==2.0.0.post2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 68)) (2.0.0.post2)
Requirement already satisfied: exceptiongroup==1.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 69)) (1.2.0)
Requirement already satisfied: fastapi-utils==0.2.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 70)) (0.2.1)
Requirement already satisfied: fastapi==0.98.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 71)) (0.98.0)
Requirement already satisfied: filelock==3.12.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 72)) (3.12.2)
Requirement already satisfied: frozenlist==1.3.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 73)) (1.3.3)
Requirement already satisfied: fs==2.4.16 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 74)) (2.4.16)
Requirement already satisfied: fsspec==2023.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 75)) (2023.1.0)
Requirement already satisfied: future==0.18.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 76)) (0.18.3)
Requirement already satisfied: galaxy-sequence-utils==1.1.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 77)) (1.1.5)
Requirement already satisfied: galaxy2cwl==0.1.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 78)) (0.1.4)
Requirement already satisfied: graphene-sqlalchemy==3.0.0b3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 79)) (3.0.0b3)
Requirement already satisfied: graphene==3.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 80)) (3.3)
Requirement already satisfied: graphql-core==3.2.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 81)) (3.2.3)
Requirement already satisfied: graphql-relay==3.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 82)) (3.2.0)
Requirement already satisfied: gravity==1.0.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 83)) (1.0.4)
Requirement already satisfied: greenlet==2.0.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 84)) (2.0.2)
Requirement already satisfied: gunicorn==21.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 85)) (21.2.0)
Requirement already satisfied: gxformat2==0.18.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 86)) (0.18.0)
Requirement already satisfied: h11==0.14.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 87)) (0.14.0)
Requirement already satisfied: h5grove==1.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 88)) (1.3.0)
Requirement already satisfied: h5py==3.8.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 89)) (3.8.0)
Requirement already satisfied: humanfriendly==10.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 90)) (10.0)
Requirement already satisfied: idna==3.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 91)) (3.5)
Requirement already satisfied: importlib-metadata==4.13.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 92)) (4.13.0)
Requirement already satisfied: importlib-resources==5.12.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 93)) (5.12.0)
Requirement already satisfied: isa-rwval==0.10.10 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 94)) (0.10.10)
Requirement already satisfied: isal==1.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 95)) (1.3.0)
Requirement already satisfied: isodate==0.6.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 96)) (0.6.1)
Requirement already satisfied: jinja2==3.1.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 97)) (3.1.2)
Requirement already satisfied: jmespath==1.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 98)) (1.0.1)
Requirement already satisfied: jsonref==1.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 99)) (1.1.0)
Requirement already satisfied: jsonschema==4.17.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 100)) (4.17.3)
Requirement already satisfied: kombu==5.3.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 102)) (5.3.5)
Requirement already satisfied: lagom==2.6.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 103)) (2.6.0)
Requirement already satisfied: lxml==4.9.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 104)) (4.9.3)
Requirement already satisfied: mako==1.2.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 105)) (1.2.4)
Requirement already satisfied: markdown-it-py==2.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 106)) (2.2.0)
Requirement already satisfied: markdown==3.4.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 107)) (3.4.4)
Requirement already satisfied: markupsafe==2.1.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 108)) (2.1.3)
Requirement already satisfied: mdurl==0.1.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 109)) (0.1.2)
Requirement already satisfied: mercurial==6.6 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 110)) (6.6)
Requirement already satisfied: mistune==2.0.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 111)) (2.0.5)
Requirement already satisfied: mrcfile==1.4.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 112)) (1.4.3)
Requirement already satisfied: msal==1.25.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 113)) (1.25.0)
Requirement already satisfied: msgpack==1.0.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 114)) (1.0.5)
Requirement already satisfied: multidict==6.0.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 115)) (6.0.4)
Requirement already satisfied: mypy-extensions==1.0.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 116)) (1.0.0)
Requirement already satisfied: networkx==2.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 117)) (2.5)
Requirement already satisfied: nodeenv==1.8.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 118)) (1.8.0)
Requirement already satisfied: numpy==1.24.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 120)) (1.24.4)
Requirement already satisfied: oauthlib==3.2.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 122)) (3.2.2)
Requirement already satisfied: orjson==3.9.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 123)) (3.9.7)
Requirement already satisfied: oyaml==1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 124)) (1.0)
Requirement already satisfied: packaging==23.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 125)) (23.2)
Requirement already satisfied: paramiko==3.3.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 126)) (3.3.1)
Requirement already satisfied: parsley==1.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 127)) (1.3)
Requirement already satisfied: paste==3.7.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 128)) (3.7.1)
Requirement already satisfied: pastedeploy==3.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 129)) (3.1.0)
Requirement already satisfied: pebble==5.0.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 130)) (5.0.4)
Requirement already satisfied: pkgutil-resolve-name==1.3.10 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 131)) (1.3.10)
Requirement already satisfied: promise==2.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 132)) (2.3)
Requirement already satisfied: prompt-toolkit==3.0.41 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 133)) (3.0.41)
Requirement already satisfied: prov==1.5.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 134)) (1.5.1)
Requirement already satisfied: psutil==5.9.6 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 135)) (5.9.6)
Requirement already satisfied: pulsar-galaxy-lib==0.15.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 136)) (0.15.5)
Requirement already satisfied: pyasn1==0.5.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 137)) (0.5.1)
Requirement already satisfied: pycparser==2.21 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 138)) (2.21)
Requirement already satisfied: pycryptodome==3.19.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 139)) (3.19.0)
Requirement already satisfied: pydantic-tes==0.1.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 140)) (0.1.5)
Requirement already satisfied: pydantic==1.10.13 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 141)) (1.10.13)
Requirement already satisfied: pydot==1.4.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 143)) (1.4.2)
Requirement already satisfied: pyeventsystem==0.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 144)) (0.1.0)
Requirement already satisfied: pyfaidx==0.7.2.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 145)) (0.7.2.2)
Requirement already satisfied: pygments==2.17.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 146)) (2.17.2)
Requirement already satisfied: pyjwt==2.8.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 147)) (2.8.0)
Requirement already satisfied: pykwalify==1.8.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 149)) (1.8.0)
Requirement already satisfied: pylibmagic==0.5.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 150)) (0.5.0)
Requirement already satisfied: pynacl==1.5.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 151)) (1.5.0)
Requirement already satisfied: pyparsing==3.0.9 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 152)) (3.0.9)
Requirement already satisfied: pyrsistent==0.19.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 155)) (0.19.3)
Requirement already satisfied: pysam==0.22.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 156)) (0.22.0)
Requirement already satisfied: python-dateutil==2.8.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 157)) (2.8.2)
Requirement already satisfied: python-jose==3.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 158)) (3.3.0)
Requirement already satisfied: python-magic==0.4.27 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 159)) (0.4.27)
Requirement already satisfied: python-multipart==0.0.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 160)) (0.0.7)
Requirement already satisfied: python3-openid==3.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 161)) (3.2.0)
Requirement already satisfied: pytz==2023.3.post1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 162)) (2023.3.post1)
Requirement already satisfied: pyyaml==6.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 163)) (6.0.1)
Requirement already satisfied: pyzmq==25.1.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 164)) (25.1.1)
Requirement already satisfied: rdflib==6.2.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 165)) (6.2.0)
Requirement already satisfied: refgenconf==0.12.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 166)) (0.12.2)
Requirement already satisfied: regex==2023.10.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 167)) (2023.10.3)
Requirement already satisfied: repoze-lru==0.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 168)) (0.7)
Requirement already satisfied: requests-oauthlib==1.3.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 169)) (1.3.1)
Requirement already satisfied: requests-toolbelt==1.0.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 170)) (1.0.0)
Requirement already satisfied: requests-unixsocket==0.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 171)) (0.3.0)
Requirement already satisfied: requests==2.31.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 172)) (2.31.0)
Requirement already satisfied: rich==13.7.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 173)) (13.7.0)
Requirement already satisfied: rocrate==0.9.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 174)) (0.9.0)
Requirement already satisfied: routes==2.5.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 175)) (2.5.1)
Requirement already satisfied: rsa==4.9 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 176)) (4.9)
Requirement already satisfied: ruamel-yaml-clib==0.2.8 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 177)) (0.2.8)
Requirement already satisfied: ruamel-yaml==0.17.21 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 178)) (0.17.21)
Requirement already satisfied: s3fs==2023.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 179)) (2023.1.0)
Requirement already satisfied: schema-salad==8.4.20230808163024 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 180)) (8.4.20230808163024)
Requirement already satisfied: setuptools-scm==5.0.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 181)) (5.0.2)
Requirement already satisfied: setuptools==68.0.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 182)) (68.0.0)
Requirement already satisfied: shellescape==3.8.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 183)) (3.8.1)
Requirement already satisfied: six==1.16.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 184)) (1.16.0)
Requirement already satisfied: sniffio==1.3.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 185)) (1.3.0)
Requirement already satisfied: social-auth-core[openidconnect]==4.0.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 186)) (4.0.3)
Requirement already satisfied: sortedcontainers==2.4.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 187)) (2.4.0)
Requirement already satisfied: sqlalchemy==1.4.50 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 188)) (1.4.50)
Requirement already satisfied: sqlitedict==2.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 189)) (2.1.0)
Requirement already satisfied: sqlparse==0.4.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 190)) (0.4.4)
Requirement already satisfied: starlette-context==0.3.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 191)) (0.3.5)
Requirement already satisfied: starlette-graphene3==0.6.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 192)) (0.6.0)
Requirement already satisfied: starlette==0.27.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 193)) (0.27.0)
Requirement already satisfied: supervisor==4.2.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 194)) (4.2.5)
Requirement already satisfied: svgwrite==1.4.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 195)) (1.4.3)
Requirement already satisfied: tenacity==8.2.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 196)) (8.2.3)
Requirement already satisfied: tifffile==2021.11.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 197)) (2021.11.2)
Requirement already satisfied: tinydb==4.8.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 198)) (4.8.0)
Requirement already satisfied: tomli==2.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 199)) (2.0.1)
Requirement already satisfied: tornado==6.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 200)) (6.2)
Requirement already satisfied: tqdm==4.66.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 201)) (4.66.1)
Requirement already satisfied: tuspy==1.0.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 202)) (1.0.1)
Requirement already satisfied: tuswsgi==0.5.5 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 203)) (0.5.5)
Requirement already satisfied: typing-extensions==4.7.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 204)) (4.7.1)
Requirement already satisfied: tzlocal==5.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 206)) (5.1)
Requirement already satisfied: ubiquerg==0.6.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 207)) (0.6.3)
Requirement already satisfied: urllib3==1.26.18 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 208)) (1.26.18)
Requirement already satisfied: uvicorn==0.22.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 209)) (0.22.0)
Requirement already satisfied: uvloop==0.18.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 210)) (0.18.0)
Requirement already satisfied: vine==5.1.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 211)) (5.1.0)
Requirement already satisfied: wcwidth==0.2.12 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 212)) (0.2.12)
Requirement already satisfied: webencodings==0.5.1 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 213)) (0.5.1)
Requirement already satisfied: webob==1.8.7 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 214)) (1.8.7)
Requirement already satisfied: whoosh==2.7.4 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 215)) (2.7.4)
Requirement already satisfied: wrapt==1.16.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 216)) (1.16.0)
Requirement already satisfied: yacman==0.9.2 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 217)) (0.9.2)
Requirement already satisfied: yarl==1.9.3 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 218)) (1.9.3)
Requirement already satisfied: zipp==3.15.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 219)) (3.15.0)
Requirement already satisfied: zipstream-new==1.1.8 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 220)) (1.1.8)
Requirement already satisfied: zstandard==0.21.0 in ./.venv/lib/python3.8/site-packages (from -r requirements.txt (line 221)) (0.21.0)
Requirement already satisfied: tzdata>=2022.7 in ./.venv/lib/python3.8/site-packages (from celery==5.3.6->-r requirements.txt (line 39)) (2024.1)

[notice] A new release of pip is available: 23.0.1 -> 24.0
[notice] To update, run: pip install --upgrade pip

[notice] A new release of pip is available: 23.0.1 -> 24.0
[notice] To update, run: pip install --upgrade pip
Looking in indexes: https://wheels.galaxyproject.org/simple, https://pypi.python.org/simple
Requirement already satisfied: pykube==0.15.0 in ./.venv/lib/python3.8/site-packages (from -r /dev/stdin (line 1)) (0.15.0)
Requirement already satisfied: PyYAML in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (6.0.1)
Requirement already satisfied: requests>=2.12 in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (2.31.0)
Requirement already satisfied: six>=1.10.0 in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.16.0)
Requirement already satisfied: tzlocal in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (5.1)
Requirement already satisfied: oauth2client in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (4.1.3)
Requirement already satisfied: requests-oauthlib in ./.venv/lib/python3.8/site-packages (from pykube==0.15.0->-r /dev/stdin (line 1)) (1.3.1)
Requirement already satisfied: urllib3<3,>=1.21.1 in ./.venv/lib/python3.8/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (1.26.18)
Requirement already satisfied: certifi>=2017.4.17 in ./.venv/lib/python3.8/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (2023.11.17)
Requirement already satisfied: idna<4,>=2.5 in ./.venv/lib/python3.8/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (3.5)
Requirement already satisfied: charset-normalizer<4,>=2 in ./.venv/lib/python3.8/site-packages (from requests>=2.12->pykube==0.15.0->-r /dev/stdin (line 1)) (3.3.2)
Requirement already satisfied: httplib2>=0.9.1 in ./.venv/lib/python3.8/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.22.0)
Requirement already satisfied: pyasn1-modules>=0.0.5 in ./.venv/lib/python3.8/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.3.0)
Requirement already satisfied: pyasn1>=0.1.7 in ./.venv/lib/python3.8/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (0.5.1)
Requirement already satisfied: rsa>=3.1.4 in ./.venv/lib/python3.8/site-packages (from oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (4.9)
Requirement already satisfied: oauthlib>=3.0.0 in ./.venv/lib/python3.8/site-packages (from requests-oauthlib->pykube==0.15.0->-r /dev/stdin (line 1)) (3.2.2)
Requirement already satisfied: backports.zoneinfo in ./.venv/lib/python3.8/site-packages (from tzlocal->pykube==0.15.0->-r /dev/stdin (line 1)) (0.2.1)
Requirement already satisfied: pyparsing!=3.0.0,!=3.0.1,!=3.0.2,!=3.0.3,<4,>=2.4.2 in ./.venv/lib/python3.8/site-packages (from httplib2>=0.9.1->oauth2client->pykube==0.15.0->-r /dev/stdin (line 1)) (3.0.9)

[notice] A new release of pip is available: 23.0.1 -> 24.0
[notice] To update, run: pip install --upgrade pip
The Galaxy client build is up to date and will not be rebuilt at this time.
Activating Conda environment: _galaxy_
WARNING: Your shell is not supported with Conda, attempting to use Conda env
         '_galaxy_' with manual environment setup. To avoid this
         message, use a supported shell or activate the environment before
         starting Galaxy.
Activating virtualenv at .venv
galaxy.tool_util.deps.conda_util WARNING 2024-02-27 08:36:03,223 [pN:MainProcess,p:188,tN:MainThread] Cannot install Conda because conda_prefix '/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/dependencies/_conda' exists and is not empty.
galaxy.tool_util.deps.conda_util WARNING 2024-02-27 08:36:03,227 [pN:MainProcess,p:188,tN:MainThread] Cannot install Conda because conda_prefix '/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/dependencies/_conda' exists and is not empty.
Updating service gunicorn
supervisord is not running
Updating service celery
supervisord is not running
Updating service celery-beat
supervisord is not running
Executing: galaxy
2024-02-27 08:36:07,040 WARN No file matches via include "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/supervisor/supervisord.conf.d/*.conf"
2024-02-27 08:36:07,040 INFO Included extra file "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery-beat_celery-beat.conf" during parsing
2024-02-27 08:36:07,041 INFO Included extra file "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_celery_celery.conf" during parsing
2024-02-27 08:36:07,041 INFO Included extra file "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/supervisor/supervisord.conf.d/_default_.d/galaxy_gunicorn_gunicorn.conf" during parsing
2024-02-27 08:36:07,070 INFO RPC interface 'supervisor' initialized
2024-02-27 08:36:07,070 CRIT Server 'unix_http_server' running without any HTTP authentication checking
2024-02-27 08:36:07,073 INFO supervisord started with pid 205
2024-02-27 08:36:07,277 INFO spawned: 'celery' with pid 207
2024-02-27 08:36:07,288 INFO spawned: 'celery-beat' with pid 208
2024-02-27 08:36:07,300 INFO spawned: 'gunicorn' with pid 209
2024-02-27 08:36:07,322 CRIT Handling XML-RPC request with data "<?xml version='1.0'?>\n<methodCall>\n<methodName>supervisor.getVersion</methodName>\n<params>\n</params>\n</methodCall>\n" raised an unexpected exception: Traceback (most recent call last):
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 434, in continue_request
    request.done()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 223, in done
    self.channel.push_with_producer(outgoing_producer)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 165, in push_with_producer
    self.initiate_send()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 215, in initiate_send
    self.refill_buffer()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 373, in refill_buffer
    data = p.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 98, in more
    data = self.producer.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 133, in more
    self.function (self.bytes)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 235, in log
    port = self.channel.addr[1]
IndexError: index out of range

error: uncaptured python exception, closing channel <supervisor.http.deferring_http_channel connected b'\x00' at 0x7f7355034280 channel#: 0 requests:1> (<class 'IndexError'>:index out of range [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/supervisord.py|runforever|233] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asyncore_25.py|handle_write_event|398] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|handle_write|153] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|initiate_send|215] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|refill_buffer|373] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|98] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|133] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|log|235])
2024-02-27 08:36:07,347 ERRO XML-RPC response callback error:Traceback (most recent call last):
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 88, in more
    return self.getresponse(body)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 128, in getresponse
    self.request.channel.push_with_producer (
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 165, in push_with_producer
    self.initiate_send()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 215, in initiate_send
    self.refill_buffer()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 373, in refill_buffer
    data = p.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/producers.py", line 175, in more
    data = self.producer.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/producers.py", line 202, in more
    self.function (self.bytes)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 235, in log
    port = self.channel.addr[1]
IndexError: index out of range
2024-02-27 08:36:07,359 CRIT Handling XML-RPC request with data "<?xml version='1.0'?>\n<methodCall>\n<methodName>supervisor.startAllProcesses</methodName>\n<params>\n</params>\n</methodCall>\n" raised an unexpected exception: Traceback (most recent call last):
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 424, in continue_request
    pushproducer(DeferredXMLRPCResponse(request, value))
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 165, in push_with_producer
    self.initiate_send()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 215, in initiate_send
    self.refill_buffer()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 373, in refill_buffer
    data = p.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 98, in more
    data = self.producer.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 133, in more
    self.function (self.bytes)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 235, in log
    port = self.channel.addr[1]
IndexError: index out of range

error: uncaptured python exception, closing channel <supervisor.http.deferring_http_channel connected b'\x00' at 0x7f73550347c0 channel#: 1 requests:1> (<class 'IndexError'>:index out of range [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/supervisord.py|runforever|233] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asyncore_25.py|handle_write_event|398] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|handle_write|153] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|initiate_send|215] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|refill_buffer|373] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|98] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|133] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|log|235])
2024-02-27 08:36:07,374 CRIT Handling XML-RPC request with data "<?xml version='1.0'?>\n<methodCall>\n<methodName>supervisor.getVersion</methodName>\n<params>\n</params>\n</methodCall>\n" raised an unexpected exception: Traceback (most recent call last):
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 434, in continue_request
    request.done()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 223, in done
    self.channel.push_with_producer(outgoing_producer)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 165, in push_with_producer
    self.initiate_send()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 215, in initiate_send
    self.refill_buffer()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 373, in refill_buffer
    data = p.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 98, in more
    data = self.producer.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 133, in more
    self.function (self.bytes)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 235, in log
    port = self.channel.addr[1]
IndexError: index out of range

error: uncaptured python exception, closing channel <supervisor.http.deferring_http_channel connected b'\x00' at 0x7f7355034cd0 channel#: 2 requests:1> (<class 'IndexError'>:index out of range [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/supervisord.py|runforever|233] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asyncore_25.py|handle_write_event|398] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|handle_write|153] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|initiate_send|215] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|refill_buffer|373] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|98] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|133] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|log|235])
2024-02-27 08:36:07,391 CRIT Handling XML-RPC request with data "<?xml version='1.0'?>\n<methodCall>\n<methodName>supervisor.getAllProcessInfo</methodName>\n<params>\n</params>\n</methodCall>\n" raised an unexpected exception: Traceback (most recent call last):
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/xmlrpc.py", line 434, in continue_request
    request.done()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 223, in done
    self.channel.push_with_producer(outgoing_producer)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 165, in push_with_producer
    self.initiate_send()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py", line 215, in initiate_send
    self.refill_buffer()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 373, in refill_buffer
    data = p.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 98, in more
    data = self.producer.more()
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 133, in more
    self.function (self.bytes)
  File "/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py", line 235, in log
    port = self.channel.addr[1]
IndexError: index out of range

error: uncaptured python exception, closing channel <supervisor.http.deferring_http_channel connected b'\x00' at 0x7f7355034a30 channel#: 3 requests:1> (<class 'IndexError'>:index out of range [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/supervisord.py|runforever|233] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asyncore_25.py|handle_write_event|398] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|handle_write|153] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/medusa/asynchat_25.py|initiate_send|215] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|refill_buffer|373] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|98] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|more|133] [/mnt/c/Users/adutta/Downloads/Galaxy/galaxy/.venv/lib/python3.8/site-packages/supervisor/http.py|log|235])
celery                           STARTING
celery-beat                      STARTING
gunicorn                         STARTING
==> /mnt/c/Users/adutta/Downloads/Galaxy/galaxy/database/gravity/log/gunicorn.log <==
galaxy.tools.search DEBUG 2024-02-26 14:56:08,009 [pN:main.1,p:2444,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (60.235 ms)
galaxy.tools.search DEBUG 2024-02-26 14:56:08,009 [pN:main.1,p:2444,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics.
galaxy.tools.search DEBUG 2024-02-26 14:56:08,065 [pN:main.1,p:2444,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (55.256 ms)
galaxy.queue_worker INFO 2024-02-26 14:56:08,074 [pN:main.1,p:2444,tN:Thread-1] Instance 'main.1' received 'rebuild_toolbox_search_index' task, executing now.
galaxy.tools.search DEBUG 2024-02-26 14:56:08,074 [pN:main.1,p:2444,tN:Thread-1] Starting to build toolbox index of panel default.
galaxy.tools.search DEBUG 2024-02-26 14:56:08,097 [pN:main.1,p:2444,tN:Thread-1] Toolbox index of panel default finished (22.897 ms)
galaxy.tools.search DEBUG 2024-02-26 14:56:08,098 [pN:main.1,p:2444,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_operations.
galaxy.tools.search DEBUG 2024-02-26 14:56:08,119 [pN:main.1,p:2444,tN:Thread-1] Toolbox index of panel ontology:edam_operations finished (21.330 ms)
galaxy.tools.search DEBUG 2024-02-26 14:56:08,120 [pN:main.1,p:2444,tN:Thread-1] Starting to build toolbox index of panel ontology:edam_topics.
galaxy.tools.search DEBUG 2024-02-26 14:56:08,141 [pN:main.1,p:2444,tN:Thread-1] Toolbox index of panel ontology:edam_topics finished (21.371 ms)