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galaxyproject / tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission
https://galaxyproject.org/iuc
MIT License
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Add GeMoMa to Galaxy public server #5237

Open jaredbernard opened 1 year ago

jaredbernard commented 1 year ago

Would it be possible to add GeMoMa to one of the public servers? I understand that the developers have suggested that it can be added to Galaxy, but I've checked the tools and don't see it. Am I missing something?

Thanks in advance!

bgruening commented 1 year ago

@jaredbernard are you referring to this too? http://www.jstacs.de/index.php/GeMoMa-Docs

The tool needs at first to be described with all its parameters, inputs and outputs into a machine-readable format. This step is still missing afaik and someone needs to find time to do that.

jaredbernard commented 1 year ago

Yeah, that's the one, Bjorn. Thanks so much for taking a look. I thought they said something in their documentation about a Galaxy interface. I'm having trouble getting it installed on my linux machine via bioconda, so I thought it would be nice for everyone to have on Galaxy.

Or if there's another homology-based gene finder already on Galaxy, I'm open to it.

On Sat, Apr 8, 2023, 3:01 AM Björn Grüning @.***> wrote:

@jaredbernard https://github.com/jaredbernard are you referring to this too? http://www.jstacs.de/index.php/GeMoMa-Docs

The tool needs at first to be described with all its parameters, inputs and outputs into a machine-readable format. This step is still missing afaik and someone needs to find time to do that.

— Reply to this email directly, view it on GitHub https://github.com/galaxyproject/tools-iuc/issues/5237#issuecomment-1500830135, or unsubscribe https://github.com/notifications/unsubscribe-auth/AISSNL5ZZI7GE656FVNKXMTXAESO5ANCNFSM6AAAAAAWXDCCLA . You are receiving this because you were mentioned.Message ID: @.***>

bgruening commented 1 year ago

@abretaud might now of an alternative :)