Tutorial Feedback

[shiltemann]

This issue will collect all feedback submitted via the feedback form at the end of each tutorial

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Results have been aggregated and pro/cons per tutorial

[shiltemann]

New GTN feedback received (extended form)

Which GTN tutorial did you complete?: assembly with velvet

How did you use this tutorial?: I took the tutorial on my own.

Usefulness: 3

Quality: 3

Length: Too short

Level of detail: Not enough details

If you used this material to teach, how many students/participants attended?:

What did you like?:

What would you change?:

Please provide any feedback you have on your experience with this tutorial.: I want to use velvet for genome assembly but I am unable to find it on Galaxy. Is the application removed from galaxy?

Your institution: Okayama University

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: very detailed and easy to follow, even for a complete beginner - great!

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: very detailed and easy to follow, thank you

What could be improved?:

Tutorial: Introduction to Genomics and Galaxy (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 2

What did you like?:

What could be improved?:

Tutorial: Identification of the binding sites of the Estrogen receptor (ChIP-Seq data analysis)

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[shiltemann]

New GTN feedback received

What did you like?:

What could be improved?:

Tutorial: NGS data logistics (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Well structured, easy to understand.

What could be improved?:

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: The data clean-up was thoroughly covered. Every step was well explained

What could be improved?: Using the mock community. More light on rationale

Tutorial: 16S Microbial Analysis with Mothur (Metagenomics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: well explained

What could be improved?: maybe by adding more pictures next to the explanations?

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: Well-structured and helpful

What could be improved?: More information on the flanking region tool (how it works)

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Very detailed, thank you

What could be improved?:

Tutorial: Mapping (Sequence analysis)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: perfect step by step !!!!

What could be improved?: maybe use human data ??

Tutorial: Hi-C analysis of Drosophila melanogaster cells using HiCExplorer (Epigenetics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: Everything works with provided data and the scale is good for use in class

What could be improved?: Could you provide the fragment size separating the paired ends? It would also be nice to have more info for instructors about the genome for doing additional exercises based on the assemblies.

Tutorial: De Bruijn Graph Assembly (Assembly)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: İts explanatory feature

What could be improved?:

Tutorial: Reference-based RNA-Seq data analysis (Transcriptomics)

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[shiltemann]

New GTN feedback received

What did you like?:

What could be improved?: I am doing this tutorial 09/2018 -> the step using the JBrowse tool works only (at least in my hands) with this version: (Galaxy Version 1.12.5+galaxy0) i had troubles finding it (maybe the search does not work properly?)

Tutorial: Genome annotation with Prokka (Genome Annotation)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: DNA Methylation data analysis (Epigenetics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: De Bruijn Graph Assembly (Assembly)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 3

What did you like?:

What could be improved?: Not clear that Trim Galore and FastQ are integrated into Galaxy. Uncertain how obtained 97,644 sequences after trim galore of bad data (I got 99,341).

Tutorial: Quality Control (Sequence analysis)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Quality Control (Sequence analysis)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: The presentation of the tutorial and the practicality of it

What could be improved?: The rate of update of the tutorial

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: I found it interesting and user friendly

What could be improved?: nothing for now

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: makes life easy

What could be improved?: very good

Tutorial: NGS data logistics (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: interesting and user friendly

What could be improved?: very good

Tutorial: Reference-based RNAseq data analysis (long) (Transcriptomics)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: The tutorial was very interesting and easy to follow

What could be improved?: Naming of the output files

Tutorial: Reference-based RNA-Seq data analysis (Transcriptomics)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: easy to follow

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: Many details and background information

What could be improved?: Fasta merging parameter How are sequences judged to be unique? should be set to 'Accession only'

Tutorial: Protein FASTA Database Handling (Proteomics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Well explained, great background information - my favourite was the greedy group resolution

What could be improved?:

Tutorial: Peptide and Protein ID using OpenMS tools (Proteomics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Introduction to Genome Assembly (Assembly)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: simplicity

What could be improved?: pick a relevant induction based on your needs

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Background info such as: The explanation of 'doubtful' for all levels

What could be improved?: SearchGui crashed with the database containing mycoplasma, with human and crap database it worked

Tutorial: Peptide and Protein ID using SearchGUI and PeptideShaker (Proteomics)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: A short introduction to Galaxy (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: A short introduction to Galaxy (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Protein FASTA Database Handling (Proteomics)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 3

What did you like?:

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: IGV Introduction (Introduction to Galaxy Analyses)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Very straight forward

What could be improved?: Nothing

Tutorial: A short introduction to Galaxy (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?: More visual examples

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Galaxy 101 (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: The good explanation and visual help

What could be improved?:

Tutorial: A short introduction to Galaxy (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 4

What did you like?: Examples and questionaries with solutions :-)

What could be improved?: More details regarding others output sections of FastQC tool

Tutorial: Quality Control (Sequence analysis)

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[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: Ansible (Galaxy Server administration)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received (extended form)

Which GTN tutorial did you complete?: Reference-based RNA-Seq data analysis (Transcriptomics)

How did you use this tutorial?: I took the tutorial on my own.

Usefulness: 4

Quality: 4

Length: Perfect

Level of detail: Not enough details

If you used this material to teach, how many students/participants attended?:

What did you like?: I like how this tutorial was laid out. It was easy to follow and execute the program.

What could be improved?:

Please provide any feedback you have on your experience with this tutorial.: I did not understand why abs(c3)>1 was used to sort absolute fold change above 2 (FC>2). Will it not be abs(c3)>2 instead? Furthermore, when I select first 100 genes with fold change above 2, it also selects data with fold change below 2.

Do you have suggestions for additional topics or tutorials?:

Your institution: IIT Guwahati, India

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?:

What could be improved?:

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: step by step introduction, everything is very clear and easy to find

What could be improved?: some buttons do not exist (anymore)? Like in "Look at all your histories" under 3. at the top line there is a "done" button - this was not displayed when I did it. That is not a tragedy but it can be confusing....

Tutorial: A short introduction to Galaxy (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

What did you like?:

What could be improved?:

Tutorial: Hi-C analysis of Drosophila melanogaster cells using HiCExplorer (Epigenetics)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: scope, topic and clarity of tutorial

What could be improved?:

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: it is clear

What could be improved?: would like to have example outputs for important steps, so if i made a mistake in step 7 i don't have to find out in step 19 and go back to revise everything. I can just use the dummy dataset for step 19 to continue and finish the practice

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated

[shiltemann]

New GTN feedback received

How much did you like this tutorial?: 5

What did you like?: Nice clear , very informative

What could be improved?: airconditioning less cold

Tutorial: From peaks to genes (Introduction to Galaxy Analyses)

Note: this comment was autogenerated