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gamcil
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cblaster
Find clustered hits from a BLAST search
MIT License
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illegal instruction & ValueError("Expected 'query_file' or 'query_ids', or 'query_profiles'")
#113
FranziNManchester
opened
3 weeks ago
0
NT DATABASE support?
#112
mthang
opened
1 month ago
0
Fix missing database and empty .fasta file error
#111
kaileyhh
opened
2 months ago
0
whether the .gb.gz format is used for the making the database?
#110
Tsingsjeen
opened
2 months ago
0
Only 50 clusters output with cblaster_extract
#109
Foreverloveknowledge
opened
3 months ago
1
Repeated failure of search at results retrieving stage:
#108
jarnie58
opened
3 months ago
1
error with extract_clusters
#107
corkdagga
opened
4 months ago
2
Update CITATION.cff with paper DOI
#106
althonos
closed
5 months ago
2
An auxiliary script that migt help
#105
AhmedElsherbini
opened
6 months ago
0
OSError: Unable to parse NCBI response
#104
GaoSpark
opened
9 months ago
4
clinker plot_cluster legend issue
#103
MarcosVoutsinos
opened
9 months ago
0
Searching genomes without gene predictions
#102
kcamnairb
opened
1 year ago
0
RuntimeError: No e-mail or NCBI API key found, please run cblaster config
#101
brshcbio
opened
1 year ago
0
creating database failure from specific genbank files
#100
yamn29302
opened
1 year ago
0
"zsh: illegal hardware instruction" error
#99
andtrum
opened
1 year ago
3
cblaster remote error with large clusters
#98
HackenDirker
opened
1 year ago
1
extract_clusters shifting reading frame
#97
McClenagoat
opened
1 year ago
0
AttributeError: 'NoneType' object has no attribute 'group'
#96
yye88
opened
1 year ago
6
Tree plot with 5 hits maximun per specie
#95
Alvarosmb
opened
1 year ago
0
Checks for mistranslations in CDS annotations and truncated regions, other minor changes
#94
malanjary-wur
closed
1 year ago
0
makedb from gbk files
#93
Tim-Kirkwood
opened
1 year ago
0
TypeError: __new__() missing 8 required positional arguments
#92
Tim-Kirkwood
opened
1 year ago
0
cblaster didn't create .dmnd out file???????
#91
neelam19051
opened
1 year ago
8
TypeError: unsupported format string passed to NoneType.__format__
#90
yye88
closed
1 year ago
5
makedb always results in 'sqlite3.OperationalError: database is locked'
#89
jjsanchezgil
opened
1 year ago
2
Saving session JSON from GUI
#88
DougSweeney
opened
1 year ago
0
Extra logging and hmmsearch fix
#87
malanjary-wur
closed
1 year ago
4
Fix off-by-one error when using extract_clusters module
#86
gamcil
closed
1 year ago
0
problem with context.py
#85
orlowskamga
opened
1 year ago
9
Error during "Fetching genomic context"
#84
Adwaith99
closed
1 year ago
5
extract_clusters off by a bp
#83
galacmr
closed
1 year ago
10
illegal hardware instruction cblaster error
#82
Pacca97
closed
2 years ago
0
Error using makedb with gff and fa files
#81
Rene-Hoover
opened
2 years ago
5
not able to proceed with gne and clinker
#80
pksun1
opened
2 years ago
3
Issues with sqlite3 and initiating cblaster
#79
pksun1
opened
2 years ago
2
IndexError fix when no hits are found in a scaffold
#78
MatthiasvdBelt
closed
2 years ago
0
Bug fixes, code enhancements, and file compression
#77
brymerr921
closed
2 years ago
1
Local runs fail with `-bat identity -bkey max`
#76
chasemc
closed
2 years ago
1
Detection of Hits not perfect
#75
JordanVV
opened
2 years ago
1
cblaster makedb: error: argument paths: Invalid path:
#74
JordanVV
closed
2 years ago
1
Finding 1 pfam in metagenome
#73
ElmavWieren
opened
2 years ago
0
Error encode in database create.
#72
Maiya19724
opened
2 years ago
2
extracted cluster genbank files have complete gene CDSes not located within nucleotide region
#71
wittetom
opened
2 years ago
0
How do I avoid RecursionError?
#70
robin84tk
opened
2 years ago
2
How to plot output after using "hmm" mode?
#69
laelbarlow
closed
2 years ago
2
low sensitibity using local search mode
#68
yye88
closed
2 years ago
4
database building error
#67
yye88
opened
2 years ago
4
No route to host
#66
yye88
opened
2 years ago
0
installation looking for wheel
#65
meaghamblin
opened
2 years ago
0
Red and orange borders in heat map
#64
aberaslop
closed
3 years ago
2
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