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gamcil / clinker

Gene cluster comparison figure generator
MIT License
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Grouping by function rather than similarity #76

Closed gamcil closed 2 years ago

gamcil commented 2 years ago

Adds gene_functions argument for grouping genes by shared function, instead of just sequence similarity.

Given a 2-column CSV resembling:

Gene Function
GENE_001 Cytochrome P450
GENE_002 Cytochrome P450
GENE_003 Methyltransferase
GENE_004 Methyltransferase
... ...

Two groups are generated, Cytochrome P450 (GENE_001 and 002), and Methyltransferase (GENE_003, GENE_004).

Similarity based groups are still generated for genes not listed in the table.