TitanCNA on targeted sequencing data

gavinha / TitanCNA

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

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Closed neethav closed 4 years ago

neethav commented 4 years ago

Can TitanCNA be used on targeted DNA sequencing data?

gavinha commented 4 years ago

Hi @neethav

TitanCNA can work on whole exome sequencing data (i.e. targeted to exons). Unfortunately, I don't believe it will work for small panels.

Best, Gavin