[Feature request] Download all medaka models with test-long (and test-hybrid)?

gbouras13 / hybracter

Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.

MIT License

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[Feature request] Download all medaka models with test-long (and test-hybrid)? #48

Closed lxsteiner closed 10 months ago

lxsteiner commented 10 months ago

In order to use hybracter on an offline node, building the environments and downloading needed packages is suggested with running test-long (and/or test-hybrid) - this should/could also download all medaka models, instead of only the one used for the test dataset. Otherwise a hint is needed to manually copy the missing model into the environment medaka/data model folder.

gbouras13 commented 10 months ago

Better to be in the hybracter install command I think but agreed it would be a good feature, I will implement it in the next update thanks @lxsteiner.

George