gbradburd conStruct issues

gbradburd / conStruct

method for modeling continuous and discrete population genetic structure

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issues

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Lack of convergence (or prohibitely long running times) for analyses for a case of "complex" genetic structure

#70 lcespedesarias opened 5 days ago
5
Covariance figure blank

#69 ruthrivkin closed 4 months ago
7
Independently standardize and write

#68 joannarifkin opened 7 months ago
10
Error: greater number of loci than there are samples

#67 mjgarrett closed 8 months ago
2
rdist rounding errors

#66 joannarifkin closed 8 months ago
6
large difference across chains

#65 renhamm closed 9 months ago
2
x.validation failed : Error in { : task 1 failed - "need finite 'xlim' values"

#64 monicafahey closed 4 months ago
12
data.block not saved from conStruct run

#63 renhamm closed 10 months ago
2
only 250 iterations are saved on construct analysis regardless of n.iter value

#62 monicafahey closed 10 months ago
3
Using multiallelic data

#61 mhopken closed 8 months ago
3
Update deprecated syntax for future rstan compatibility

#60 andrjohns closed 12 months ago
1
In cross-validation, two best-performing replicates of the same model show very different ancestry

#59 Dahn-YoungDong closed 8 months ago
6
Cross-validation error: check.data.partitions.arg()

#58 sbreitbart closed 1 year ago
2
Is parallelization possible?

#57 sbreitbart closed 1 year ago
2
High Rhat and ESS issues for K>1 with spatial analyses

#56 sbreitbart closed 1 year ago
4
AF sometimes 1

#55 renhamm closed 1 year ago
3
Questions about results interpretation

#54 quinn-ca closed 1 year ago
7
View admixture proportions with associated sample names

#53 quinn-ca closed 1 year ago
5
Fully delegate to rstantools, add check action

#52 andrjohns closed 1 year ago
2
structure2conStruct error

#51 TannerMyers closed 1 year ago
4
Messy data with lots of errors..

#50 qthomas612 closed 1 year ago
3
Bug fix in the get.var.mean.freqs function.

#49 karolisr closed 1 year ago
1
Most differentiated samples grouped in the same layer

#48 norabergman closed 1 year ago
4
Make thin value adjustable?

#47 jbruxaux closed 2 years ago
4
error creating the vignettes in conStruct

#46 SergioB1983 closed 2 years ago
2
Predictive accuracy increasing over all values of K from X-Val

#45 alex-sandercock closed 2 years ago
4
Chain Does Not Update from Iteration 1

#44 alexkrohn closed 2 years ago
4
Missed Stanc3 flag for RStan support

#43 andrjohns closed 2 years ago
1
Compatibility with next rstan

#42 andrjohns closed 3 years ago
1
Piemap plotting query

#41 kdm9 closed 2 years ago
7
Resuming an unfinished CV run?

#40 Selachophile closed 2 years ago
12
Installing covariance_fix issue

#39 lesserof2weevils closed 3 years ago
8
element that is not positive definite, xvalidation

#38 thomlmarshall closed 3 years ago
3
Extracting all iterations from model.fit object

#37 twooldridge closed 3 years ago
6
(Non-Issue) Question about parallelization in cross-validation analysis...

#36 Selachophile closed 3 years ago
10
Error freqs using RADseq data

#35 fcsalgado closed 3 years ago
7
factor of (n-1)/n

#34 petrelharp closed 3 years ago
6
covariance matrix is somehow not positive definite

#33 petrelharp closed 3 years ago
4
about the conStruct restlt

#32 guojingfang123 closed 3 years ago
2
High Rhat and ESS issues for K>1 with spatial analysis

#31 crcardenas closed 3 years ago
5
Error when running conStruct: cannot open file 'test_trace.plots.chain_1.pdf'

#30 valualv closed 4 years ago
5
Divergent transition warning

#29 dorseyb closed 3 years ago
7
Error: Incorrect number of subscripts

#28 lesserof2weevils closed 4 years ago
8
conStruct analysis

#27 AnjumanArif closed 4 years ago
4
High Rhat across replicate runs

#26 gbradburd closed 4 years ago
9
r-hat and Tail and Bulk Effective Sample Size Warnings

#25 thomlmarshall closed 3 years ago
3
Update model.comparison.R

#24 RhettRautsaw closed 5 years ago
0
Error in check.data.partitions.covmats(args)

#23 rpercino closed 4 years ago
8
Error in validate.n.samples(data.block)

#22 rpercino closed 5 years ago
3
Comparing structure model runs

#21 lesserof2weevils closed 5 years ago
11