how to import a custom motif matrix

ge11232002 / TFBSTools

Software Package for Transcription Factor Binding Site (TFBS) Analysis

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Open HZAU-dl opened 2 years ago

HZAU-dl commented 2 years ago

Hi,I have a common question: I want to import a custom motif matrix (such as :MEME)，but I don't know how to do it. Thank you!

imran-aifi commented 1 year ago

+1, I am interested in importing a set of motifs in .meme format to PWMatrix or PWMatrixList format: https://resources.altius.org/~jvierstra/projects/motif-clustering-v2.0beta/consensus_pwms.meme

Is there any tool to do this in R? I see unused code for readMEME() in IO.R, however it did not work for this file.