results_in_movement_of - change of range

[RLovering]

There is a big difference between the results_in_movement_of wiki page and the information on the gorel_edits.obo file.

Specifically on the wiki the range is:cell or cellular component whereas the gorel_edits.obo file only has the range: cell. Furthermore the gorel_edits.obo file Usage is: Use this relation to link a locomotion process to the type of cell or anatomical structure or organism that the process results in locomotion of.

So at the very least the range needs to also include: { u'WBbt:0005766': u'Anatomy', u'PO:0009012': '', u'UBERON:0001062': u'anatomical entity', u'PO:0025131': u'plant anatomical entity'} But I also think that u'GO:0005575': u'cellular_component', should be added, to cover the movement of cilia? As these won't use the 'transports' relationship. Although possibly a new term should just be requested if this AE relationship is required?

With the above change the P2G subsets maybe should be included: AE_GO:cellular_component.

The regulates_o_results_in_movement_of will need to be edited to follow the decision made above: range currently includes cellular component, (keep or delete?) as well as the cell ontologies, but will need { u'WBbt:0005766': u'Anatomy', u'PO:0009012': '', u'UBERON:0001062': u'anatomical entity', u'PO:0025131': u'plant anatomical entity'} Not sure if plant tissues/organs move?

Plus P2G subsets should be included: AE_cell_or_anatomical (and maybe AE_GO:cellular_component).

Thanks

Ruth

[dosumis]

Wiki version is out of date. gorel is now more closely aligned with usage in GO. RO needs to catch up.

• Agree that local range needs to bring in terms from other ontologies, although this is really a failure of infrastructure as should be able to do this using standard inter-ontology mappings. For now we should doc standard sets e.g for cell, set should include IDs from CL WBbt etc.
• Interesting point about movement of cilia. Need to be aligned with ontology here.

[dosumis]

Ontology is poorly axiomatised wrt cillium movement. Here's the relevant branch:

There are some terms in this branch that are also in the transport branch:

e.g.