Review annotations to GO:0019933 cAMP-mediated signaling

[pgaudet]

Dear all,

The proposal has been made to obsolete GO:0019933 cAMP-mediated signaling

Annotations are here: https://docs.google.com/spreadsheets/d/1FbtqczOsSDcXydGOk6ydTj6Ux4y_BfaCG9v6ejy2HWQ/edit#gid=0

assigned_by ARUK-UCL 6 BHF-UCL 4 CGD 10 dictyBase 15 FlyBase 2 MGI 5 ParkinsonsUK-UCL 1 RGD 44 UniProt 56

[pgaudet]

I will create the new cAMP-PKA signaling term, plus regulation, and once that done, people can review their annotations.

Thanks, Pascale

[pfey03]

@pgaudet I need the cAMP signaling for Dictyostelium without PKA. Dicty has cAMP signaling also while developing without PKA And also to aggregate without PKA

[pfey03]

@pgaudet This term doesn't help me for Dicty instead of cAMP-mediated signaling. You know that Dicty has a lot cAMP signaling and I cannot do without this term

[suzialeksander]

GO:0141156 cAMP/PKA signal transduction is the new term- @pfey03 do you still require GO:0019933 cAMP-mediated signaling?

[suzialeksander]

GO:0019933 cAMP-mediated signaling is the new term, see also https://github.com/geneontology/go-annotation/issues/4961. Can you please check annotations @RLovering @jlewsmith @hattrill @LiNiMGI @Antonialock @sylvainpoux @pfey03 @slaulederkind

[sylvainpoux]

Done, please note that some children terms, such as GO:0071880 adenylate cyclase-modulating G protein-coupled receptor signaling pathway, should not be obsoleted since they are essential for G-protein signaling. Sylvain

[LiNiMGI]

MGI done.

[hattrill]

FB done

[sylvainpoux]

Hi, could you please confirm that child terms, such as GO:0071880 adenylate cyclase-modulating G protein-coupled receptor signaling pathway, that are essential for G-protein signaling will still be valid? Thanks Sylvain

[srengel]

SGD done.

[suzialeksander]

@pgaudet can you clarify about GO:0071880