geneontology / go-ontology

Source ontology files for the Gene Ontology
http://geneontology.org/page/download-ontology
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Missing parent: group translocation activity #27496

Open hattrill opened 7 months ago

hattrill commented 7 months ago

GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity

is_a GO:0022857 transmembrane transporter activity

As part of #27495

hattrill commented 7 months ago

Remove is_a active transmembrane transporter activity parent relation for GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity GO:0090563 protein-phosphocysteine-sugar phosphotransferase activity

pgaudet commented 7 months ago

Hi @hattrill Why not call the grouping term something like 'phosphoenolpyruvate-dependent phosphotransferase system activity? See a newer review https://pubmed.ncbi.nlm.nih.gov/2832233/

hattrill commented 7 months ago

Hi @pgaudet

They could have that as a parent would map to the TC4.A https://tcdb.org/search/result.php?tc=4.A, but that term would ideally have the parent 'group translocator activity' parent to fit with the TC system for TC4 https://tcdb.org/search/result.php?tc=4