geneontology / helpdesk

The Gene Ontology Helpdesk
http://help.geneontology.org
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Download links do not work #464

Closed Cimorgh-IT closed 1 year ago

Cimorgh-IT commented 1 year ago

Describe the issue/bug

Hello I would like to download gene ontology terms data from this webpage: http://current.geneontology.org/products/pages/downloads.html for the Homo sapiens Proteins. I am coping the link and using wget or other downloading tools , but it can not download and fails.

Expected behavior

I expect to download the content in each linl.

To Reproduce

[Please include any information you can about: what, where, when, and why. Please include any URLs involved in the issue. Page: http://current.geneontology.org/products/pages/downloads.html link: http://geneontology.org/gene-associations/goa_human.gaf.gz

Screenshots

If applicable, add screenshots to help explain your problem.

Additional context

I tried with different browsers in windows 10 and different commands such as wget, curl and axel in linux

nlharris commented 1 year ago

I just went to http://current.geneontology.org/products/pages/downloads.html, clicked on goa_human.gaf (gzip), and it downloaded right away. (I'm using Chrome on a Mac.)

suzialeksander commented 1 year ago

@Cimorgh-IT Thanks for reporting this. Can you try downloading it again? I also was able to grab the file from the specified URL.

If you're not in the US, can you VPN to the USA/UK/etc.? We've had some IP-related issues on PANTHER and as far as I'm aware there shouldn't be any IP-related issues with these GAF/GPAD files, but it might explain why @nlharris and I were able to get this file without any issues.

I've also tried to attach the file I just downloaded, it is!date-generated: 2023-10-10T15:24 goa_human.gaf.gz

kltm commented 1 year ago

@Cimorgh-IT

I suspect you are suffering from this issue: https://github.com/geneontology/go-site/issues/2154 This should be fixed with the next release. Until then, as mentioned above, manually entering the URL or changing the link URL to HTTPS should work.

Best,

-Seth

Cimorgh-IT commented 1 year ago

Thanks for the response. It worked.

----- Original Message ----- From: kltm @. To: "geneontology/helpdesk" @.> Cc: Cimorgh IT Solutions @.>, @.> Sent: Mon, 20 Nov 2023 20:13:28 +0000 (UTC) Subject: Re: [geneontology/helpdesk] Download links do not work (Issue #464)

@Cimorgh-IT

I suspect you are suffering from this issue: geneontology/go-site#2154 This should be fixed with the next release. Until then, as mentioned above, manually entering the URL or changing the link URL to HTTPS should work.

Best,

-Seth — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you were mentioned.Message ID: @.***>