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genepi / nf-gwas

A nextflow pipeline to perform state-of-the-art genome-wide association studies.
https://genepi.github.io/nf-gwas
MIT License
63 stars 21 forks source link

Remove unused tabix-merge.jar file #76

Closed ejseqera closed 1 year ago

ejseqera commented 1 year ago

Addresses issue #75 with the large 22MB tabix-merge.jar file that doesn't seem to be used within the workflow. I have tested removal of this in v0.6.4 with profile test and been able to successfully run the pipeline.

This will prevent errors such as Module file size cannot be bigger than 1 MB - offending file: /.nextflow/assets/genepi/nf-gwas/bin/tabix-merge.jar

I don't see where this jar file is used within the pipeline but if it is indeed, perhaps we can include it in within the image itself.

lukfor commented 1 year ago

Thanks for your help! 🙌 tabix-merge was replaced with genomic-utils which is included in the docker image. Therefore, the jar file is obsolete. 👍