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genome-in-a-bottle / giab_data_indexes

This repository contains data indexes from NIST's Genome in a Bottle project.
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Raw PacBio subreads data #15

Closed PengNi closed 3 years ago

PengNi commented 3 years ago

Dear GIAB team,

Thanks for the wonderful data collection. Maybe an inappropriate question, would it be possible to access the raw PacBio SequelII CCS 11kb data of NA12878 (or other samples), i.e., subreads.bam with IPD and other information in it?

Thank you in advance!

Best, Peng

jzook commented 3 years ago

Dear Peng,

More recent raw 15kb and 24kb HiFi data for HG002 from PacBio for the DeepConsensus paper is at https://console.cloud.google.com/storage/browser/brain-genomics-public/research/deepconsensus/publication/sequencing;tab=objects?pageState=(%22StorageObjectListTable%22:(%22f%22:%22%255B%255D%22))&prefix=&forceOnObjectsSortingFiltering=false

Cheers, Justin

PengNi commented 3 years ago

@jzook , awesome! Thank you for telling me! I will have a try.

Best, Peng