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genome-nexus / genome-nexus-importer

Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
MIT License
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Update grch38 ensembl95 hotspots #64

Closed leexgh closed 1 year ago

leexgh commented 1 year ago

Only run grch38 ensembl95 for now. Need to update transcripts first(similar to https://github.com/genome-nexus/genome-nexus-importer/pull/62), then update other versions hotspots.

Commands to update hotspots files:

cd data/common_input/hotspots
export VERSION=grch38_ensembl95
make hotspots_v2_and_3d_grch37.txt
make all
leexgh commented 1 year ago

Hi @pieterlukasse , thanks for checking! Could you show me where you see BRAF on ENST00000288602? A diff screenshot or something like that would be good, I can't find it by searching ENST00000288602

pieterlukasse commented 1 year ago

@leexgh ignore my comment. I was looking at the file of grch38_ensembl92/ folder by mistake. The grch38_ensembl95/ folder contains the expected ENST00000646891 for BRAF 👍

pieterlukasse commented 1 year ago

🎉