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genome / pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
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Cram file support? #85

Open jjfarrell opened 6 years ago

jjfarrell commented 6 years ago

Does pindel read cram files?

grospo commented 5 years ago

Any news on this issue? It seems to not work properly on a cram file. Will developers provide a pindel version supporting cram file? Thank you in advance!