Poor performance of Serotypefinder using fastq files as input

genomic-medicine-sweden / jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.

https://jasen.readthedocs.io/en/latest/

GNU General Public License v3.0

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Open mhkc opened 4 months ago

mhkc commented 4 months ago

Serotypefinder performs really poorly when using FastQ files as input. It perform much better on Skesa assemblies.