genomic-medicine-sweden / jasen

Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.
https://jasen.readthedocs.io/en/latest/
GNU General Public License v3.0
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Create subrun command to partially run jasen modules #355

Open ryanjameskennedy opened 1 month ago

ryanjameskennedy commented 1 month ago

When software used by JASEN gets updated, it is cumbersome to rerun jasen on the samples again (in many cases there will be thousands of samples to rerun). So it would be nice to be able to switch on only the modules that that need to be updated.