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gephi / gephi-toolkit-demos

Quick demos using the Toolkit
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bump up gephi toolkit for 0.9.3->0.10.0 #14

Closed shibacow closed 1 year ago

shibacow commented 1 year ago

overview

bump up for gephi toolkit version 0.9.3 to 0.10.0

Build

mvn compile
mvn test
JDK_JAVA_OPTIONS="--add-opens=java.base/java.net=ALL-UNNAMED" mvn exec:java -Dexec.mainClass="org.gephi.toolkit.demos.Main" -Dexec.cleanupDaemonThreads=false

known error

java.lang.IllegalArgumentException: NaN is not a finite number

java.lang.IllegalArgumentException: NaN is not a finite number
        at org.apache.pdfbox.pdmodel.PDPageContentStream.writeOperand(PDPageContentStream.java:2453)
        at org.apache.pdfbox.pdmodel.PDPageContentStream.moveTo(PDPageContentStream.java:1757)
        at org.gephi.preview.plugin.renderers.ArrowRenderer.render(ArrowRenderer.java:133)
        at org.gephi.preview.PreviewControllerImpl.render(PreviewControllerImpl.java:236)
        at org.gephi.preview.PreviewControllerImpl.render(PreviewControllerImpl.java:190)
        at org.gephi.io.exporter.preview.PDFExporter.execute(PDFExporter.java:118)
        at org.gephi.io.exporter.impl.ExportControllerImpl.exportFile(ExportControllerImpl.java:117)
        at org.gephi.io.exporter.impl.ExportControllerImpl.exportFile(ExportControllerImpl.java:92)
        at org.gephi.toolkit.demos.PartitionGraph.script(PartitionGraph.java:110)
        at org.gephi.toolkit.demos.Main.main(Main.java:37)
        at org.codehaus.mojo.exec.ExecJavaMojo$1.run(ExecJavaMojo.java:254)
        at java.base/java.lang.Thread.run(Thread.java:833)

However, normal pdfs are generated.

module java.base does not "opens java.net"

java resouce access error.

This error can be resolved by setting the following environment variables　-> JDK_JAVA_OPTIONS="--add-opens=java.base/java.net=ALL-UNNAMED"

SEVERE: No way to find original stream handler for jar protocol
java.lang.reflect.InaccessibleObjectException: Unable to make field transient java.net.URLStreamHandler java.net.URL.handler accessible: module java.base does not "opens java.net" to unnamed module @4a59fb8a
        at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:354)
        at java.base/java.lang.reflect.AccessibleObject.checkCanSetAccessible(AccessibleObject.java:297)
        at java.base/java.lang.reflect.Field.checkCanSetAccessible(Field.java:178)
        at java.base/java.lang.reflect.Field.setAccessible(Field.java:172)
        at org.netbeans.ProxyURLStreamHandlerFactory.register(ProxyURLStreamHandlerFactory.java:59)
        at org.netbeans.core.startup.Main.initializeURLFactory(Main.java:80)
        at org.netbeans.core.startup.NbRepository.<clinit>(NbRepository.java:47)
        at java.base/jdk.internal.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)