gerlichlab / looptrace

Fork (from EMBL Gitlab) of the looptrace project: https://git.embl.de/grp-ellenberg/looptrace
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We should raise an error if the minimum separation threshold for regional spots is too big #315

Open vreuter opened 7 months ago

vreuter commented 7 months ago

Definitely it makes no sense to have the minimum separation be greater than the number of $z$ slices (which we can get from ZARRs), but we can and probably should even be stricter, perhaps warning if the threshold's greater than 1/3 of the $z$ depth, and throwing an error if it's more than 2/3 or 3/4.