[RR Request]:HistoJS v1.0.0

[Mmasoud1]

Open Source Project name

HistoJS

What is your project?

HistoJS is a new web-based interactive tool designed to overcome the challenges of using highly-multiplexed immunofluorescence (HMIF) images for spatial biology research. HistoJS provides open-source and extensible tools for analyzing spatial-molecular patterns, offering a deeper understanding of single-cell spatial relationships. It also features machine learning algorithms in a user-friendly interactive interface for the biomedical community.

Version

1.0.0

Date

12/31/2023

Description of breaking changes

• Support for accessing and managing Digital Slide Archive (DSA), including hosted immunofluorescence image data and meta-data.
• Navigation of OME-TIFF datasets on DSA.
• Visualization of immunofluorescence images, including channel grouping for further analysis.
• Real-time image processing and analysis, covering tasks such as cell segmentation, phenotyping, classification, correlations, spatial analysis, and quantification of cell types to unveil cell interactions.
• Detection of cell neighbors with spatial plotting and analysis using Delaunay neighborhood graphs.
• Interactive features facilitating the identification of disease-specific signatures, offering valuable insights into the molecular basis of diseases.

GitHub Repo

https://github.com/Mmasoud1/HistoJS

Website

https://mmasoud1.github.io/HistoJS/

Link to changelog

https://github.com/Mmasoud1/HistoJS/releases/tag/v1.0.0

Social media

https://twitter.com/MMasoud2021

Anything else to add?

This is the first release of HistoJS

[mishmanners]

Congrats on being featured in the January Release Radar 🥳

• Read the blog here
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• Feel free to retweet Mish's tweet featuring you