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glycoinfo / GlycanBuilder2

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GlyTouCan accession G42735RP drawn poorly... #71

Open edwardsnj opened 6 months ago

edwardsnj commented 6 months ago

See example here: https://glymage.glyomics.org/image/snfg/extended/G42735RP.svg

Note that this is a problematic WURCS sequence (1-linked Neu5Ac with 2-6 ring) but others (including G21986MJ) do not show the same problems with their images.

See: https://gnome.glyomics.org/StructureBrowser.html?focus=G42735RP for additional examples.

yamadaissaku commented 6 months ago

Thank you for contacting us about the imaging issue. This is an imaging issue and we would like to address it.The issue that is 1-linked Neu5Ac is due to incorrect information in GlycoCT, as we have looked at GlyTouCan. I have registered the WURCS corrected to 2-linked Neu5Ac with GlyTouCan.

WURCS=2.0/7,13,12/[a2122h-1x_1-5_2*NCC/3=O][a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-4-2-5-4-2-5-2-5-6-7/a4-b1_a6-l1_b4-c1_c3-d1_c6-g1_d2-e1_e4-f1_g2-h1_g6-j1_h4-i1_j4-k1_m2-f?|i?|k?}

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