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glycoinfo / GlycoRDF

GlycoRDF is an RDF standard for glycomics data.
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add smiles sequence format #4

Open Toux opened 6 years ago

Toux commented 6 years ago

Dear coleagues, please find a glycan.owl file with three lines added for the support of smiles sequence format. Could you please check that there are no other sections which need editing in regard to this update.

glycan.zip

yamadaissaku commented 6 years ago

Hi, I think that addition of smiles sequence format is no problem in GlycoRDF. However, Chemical Information Ontology (CHEMINF) has a class of SMILES format about chemical structure.

ex. http://semanticscience.org/resource/CHEMINF_000020 This is a class for SMILES format, and this class is subclass of "molecular structure encoding format specification" class. You can use this CHEMINF ontology, too.

I propose to add following rdfs:comment line in GlycoRDF.

rdfs:comment "SMILES is the Simplified Molecular Input line Entry Specification. This format well use for chemical structure of small molecules."^^xsd:string ;