rykahsay
commented
1 week ago Here is what I have so far:
$ cat tests/examples/pages/list_init.json
{
"table_id":"protein"
}$ http POST :8082/pages/list_init/ < tests/examples/pages/list_init.json
HTTP/1.1 200 OK
Connection: close
Content-Length: 3698
Content-Type: application/json
Date: Fri, 20 Sep 2024 18:09:00 GMT
Server: gunicorn
{
"columns": [
{
"id": "general",
"label": "General",
"options": [
{
"id": "uniprot_canonical_ac",
"label": "UniProtKB Accession",
"order": 1
},
{
"id": "mass",
"label": "Chemical Mass (Da)",
"order": 2
},
{
"id": "protein_name",
"label": "UniProtKB Name",
"order": 3
},
{
"id": "gene_name",
"label": "Gene Name",
"order": 4
},
{
"id": "organism",
"label": "Organism",
"order": 5
},
{
"id": "refseq_name",
"label": "RefSeq Name",
"order": 6
},
{
"id": "refseq_ac",
"label": "RefSeq Accession",
"order": 7
},
{
"id": "tax_id",
"label": "Taxonomy ID",
"order": 8
},
{
"id": "missing_score",
"label": "missing_score",
"order": 9
},
{
"id": "hit_score",
"label": "Hit Score",
"order": 10
}
],
"order": 1,
"tooltip": ""
},
{
"id": "names",
"label": "Names",
"options": [
{
"id": "gene_names_uniprotkb",
"label": "gene_names_uniprotkb",
"order": 11
},
{
"id": "gene_names_refseq",
"label": "gene_names_refseq",
"order": 12
},
{
"id": "protein_names_uniprotkb",
"label": "protein_names_uniprotkb",
"order": 1
},
{
"id": "protein_names_refseq",
"label": "protein_names_refseq",
"order": 1
}
],
"order": 11,
"tooltip": ""
},
{
"id": "diseases",
"label": "Diseases",
"options": [
{
"id": "disease",
"label": "Disease",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "pathways",
"label": "Pathways",
"options": [
{
"id": "pathway",
"label": "Pathway",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "publications",
"label": "Publications",
"options": [
{
"id": "publication_count",
"label": "publication_count",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "function",
"label": "Function",
"options": [
{
"id": "function",
"label": "function",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "glycosylation",
"label": "Glycosylation",
"options": [
{
"id": "predicted_glycosites",
"label": "predicted_glycosites",
"order": 1
},
{
"id": "predicted_n_glycosites",
"label": "predicted_n_glycosites",
"order": 1
},
{
"id": "predicted_o_glycosites",
"label": "predicted_o_glycosites",
"order": 1
},
{
"id": "reported_n_glycosites",
"label": "reported_n_glycosites",
"order": 1
},
{
"id": "reported_o_glycosites",
"label": "reported_o_glycosites",
"order": 1
},
{
"id": "reported_n_glycosites_with_glycan",
"label": "reported_n_glycosites_with_glycan",
"order": 1
},
{
"id": "reported_o_glycosites_with_glycan",
"label": "reported_o_glycosites_with_glycan",
"order": 1
},
{
"id": "total_reported_n_glycosites",
"label": "total_reported_n_glycosites",
"order": 1
},
{
"id": "total_reported_o_glycosites",
"label": "total_reported_o_glycosites",
"order": 1
},
{
"id": "total_n_glycosites",
"label": "total_n_glycosites",
"order": 1
},
{
"id": "total_o_glycosites",
"label": "total_o_glycosites",
"order": 1
},
{
"id": "reported_fully_resolved_glycans",
"label": "reported_fully_resolved_glycans",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "phosphorylation",
"label": "Phosphorylation",
"options": [
{
"id": "reported_phosphosites",
"label": "reported_phosphosites",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "mutagensis",
"label": "Mutagensis",
"options": [
{
"id": "reported_mutagensis",
"label": "reported_mutagensis",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "glycation",
"label": "Glycation",
"options": [
{
"id": "reported_glycation",
"label": "reported_glycation",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "snv",
"label": "SNV",
"options": [
{
"id": "reported_snv",
"label": "reported_snv",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "interactions",
"label": "Interactions",
"options": [
{
"id": "reported_interactions",
"label": "reported_interactions",
"order": 1
}
],
"order": 1,
"tooltip": ""
},
{
"id": "biomarkers",
"label": "Biomarkers",
"options": [
{
"id": "biomarker_type",
"label": "biomarker_type",
"order": 1
}
],
"order": 1,
"tooltip": ""
}
]
}
sujeetvkulkarni
Need to implement a list init api which takes a table id as input and returns list of columns supported by the table.
The response needs to contain id, name, classification/category.
Would like to have: List of ids representing columns will be sent in list api so that backend can reduce the response size of list api.
Current plan is backend will send all column values as response to list api call and frontend will only display user selected ones.
schema for list inti api: https://api.glygen.org/pages/list_init?query={"table_id":"specific_table_id"}
response of list inti api:
With above response backend column name and frontend column will be tightly coupled.
Need to decide: Does backend need to send more/modify information in list_init_api/list_api response related to each column so that columns can be created dynamically? Looks like below additional information need to be send to make it dynamic: