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glygener
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glygen.cfde.generator
Java program for the generation of CFDE metadata files from GlyGen data.
GNU General Public License v3.0
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Add Readme for steps done by Jeet for data submission to the GitHub CFDE Repo Readme
#44
jeet-vora
opened
1 year ago
0
Ask Robel to add CFDE datasets retrospectively to data.glygen.org
#43
jeet-vora
opened
1 year ago
0
Add CFDE data packages to SP
#42
jeet-vora
opened
1 year ago
0
Send updated files
#39
ReneRanzinger
opened
1 year ago
0
Submit June TSV file
#38
ReneRanzinger
opened
1 year ago
0
Rerun TSV file generation with new ignore files
#37
ReneRanzinger
closed
1 year ago
5
Run submission with no-irgnore TSVs
#36
ReneRanzinger
opened
1 year ago
1
Run the TSV file generation without ignores
#35
ReneRanzinger
closed
1 year ago
1
Update confirguration files (June '23)
#34
ReneRanzinger
closed
1 year ago
1
Try to find a DRS client for testing
#33
ReneRanzinger
opened
1 year ago
0
Look into DRS implementation
#32
ReneRanzinger
opened
1 year ago
0
Evaluation of CFDE DCCs
#41
ReneRanzinger
opened
1 year ago
0
Gene ID conversion tool from CFDE
#40
ReneRanzinger
opened
1 year ago
0
DRS evalutation
#31
ReneRanzinger
opened
1 year ago
4
Study knowledge graph guidelines and plan GlyGen strategy
#30
ReneRanzinger
opened
1 year ago
1
Addition of "GlyTouCan ID" and "protein glycosylation site" as data terms
#29
jeet-vora
opened
2 years ago
5
Run CFDE data generation tool for December submission
#28
ReneRanzinger
closed
1 year ago
0
Update of datasets for CFDE submission
#27
jeet-vora
closed
1 year ago
1
Dec 1st week submission with old data package
#26
jeet-vora
closed
1 year ago
1
New data submission December 15
#25
ReneRanzinger
opened
2 years ago
1
Explore own FAIRness metric
#24
ReneRanzinger
opened
2 years ago
0
GlyGen FAIRness Assessment
#23
jeet-vora
closed
2 years ago
3
Problem using 'OBI:0001985' in assay type and analysis type
#22
ReneRanzinger
closed
2 years ago
2
Glycan and Protein ID issue
#21
jeet-vora
opened
2 years ago
1
Update the code according to the model changes
#20
ReneRanzinger
opened
2 years ago
0
Virus protein accessions without ensemble mapping
#19
jeet-vora
opened
2 years ago
4
GlyTouCan IDs masterlist for June submission
#18
ReneRanzinger
opened
2 years ago
1
Missing Ensemble IDs in CFDE protein dictionary (submission prep tool)
#17
ReneRanzinger
opened
2 years ago
2
Enrich CFDE portal pages with information from GlyGen
#16
ReneRanzinger
opened
2 years ago
1
New data submission (June 15, 2022)
#15
ReneRanzinger
closed
2 years ago
1
Error in glycan masterlist (G12422YW)
#14
ReneRanzinger
closed
1 year ago
10
Submission for April 15
#13
ReneRanzinger
closed
2 years ago
0
Test first version
#12
ReneRanzinger
closed
2 years ago
2
Separate warning and error logging
#11
ReneRanzinger
closed
2 years ago
0
Verify ID space for proteins and compounds
#10
ReneRanzinger
closed
2 years ago
2
Allow data type to be empty in the file configuration
#9
ReneRanzinger
closed
2 years ago
1
Verify first test batch
#8
ReneRanzinger
closed
2 years ago
1
New presubmission script
#7
ReneRanzinger
closed
2 years ago
0
Bug: data:2042 not accepted as file format
#6
ReneRanzinger
closed
2 years ago
3
Missing mapping file: uniprotkb_canonical_ac2ensembl.csv
#5
ReneRanzinger
closed
2 years ago
3
GlyTouCan to PubChem mapping
#4
ReneRanzinger
closed
2 years ago
3
Clarification about UniProtKB term ID
#3
ReneRanzinger
closed
2 years ago
1
Update properties file
#2
ReneRanzinger
closed
2 years ago
1
Provide configuraton file
#1
ReneRanzinger
closed
2 years ago
1