goeckslab tools-mti issues

goeckslab / tools-mti

MIT License

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issues

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Fix celesta plot_cells indexing bug

#90 CameronFRWatson closed 4 weeks ago
0
CELESTA: fix plot_cells variable (again)

#89 CameronFRWatson closed 1 month ago
0
CELESTA: Fix cheetah variables to work with galaxy-22.01

#88 CameronFRWatson closed 1 month ago
0
New Galaxy tool wrapper for CELESTA

#87 CameronFRWatson closed 1 month ago
0
Galaxy tool wrapper for Visinity

#86 CameronFRWatson opened 2 months ago
0
Expose colormap param for Galaxy scimap stacked_barplot wrapper

#85 CameronFRWatson closed 2 months ago
0
Fix ASCII error in rename_tiff_channels & add more robust test data

#84 CameronFRWatson closed 3 months ago
0
Non-ASCII characters in OME XML metadata causes rename_tiff_channels to fail

#83 CameronFRWatson closed 3 months ago
1
Add coordinate scaling tool to Galaxy mti-utils

#82 CameronFRWatson closed 3 months ago
1
Add spatial scatterplot function to Galaxy Squidpy tools

#81 CameronFRWatson closed 3 months ago
2
adding a template to make PR reviews easier

#80 CameronFRWatson closed 3 months ago
0
Update CI infrastructure

#79 nilchia opened 3 months ago
1
Update pr.yaml

#78 nilchia closed 3 months ago
0
Update ci.yaml

#77 nilchia closed 3 months ago
0
Expose scimap spatial LDA outputs to Galaxy user

#76 CameronFRWatson closed 3 months ago
0
squidpy fix nfs error

#75 nilchia closed 3 months ago
3
Squidpy fix nfs error

#74 nilchia closed 3 months ago
0
Quantification update

#73 hannah413 closed 3 months ago
1
Add better image assertions to tool tests when we update to Galaxy v24

#72 CameronFRWatson opened 4 months ago
1
Update scimap to 2.1.0

#71 CameronFRWatson closed 4 months ago
0
Dynamically determine chunk size for background subtraction tool

#70 CameronFRWatson opened 4 months ago
0
Vitessce container update

#69 luke-c-sargent closed 4 months ago
5
disabling progress bars, removing numba_parallel

#68 luke-c-sargent closed 5 months ago
0
Add hierarchical variable to address bug in galaxy v22.01

#67 CameronFRWatson closed 5 months ago
0
Handle zero values in autofluorescence signal processing

#66 CameronFRWatson closed 5 months ago
0
Vitessce container update

#65 luke-c-sargent closed 5 months ago
0
Wrap bg subtract

#64 hannah413 closed 4 months ago
0
squidpy -> 1.4.1, anndata -> 0.10.7

#63 luke-c-sargent closed 5 months ago
0
Add channel naming back into Ashlar 1.18 wrapper

#62 CameronFRWatson opened 7 months ago
1
Add better default channel colors to rename_tiff_channels

#61 CameronFRWatson closed 3 months ago
1
Need to update analysis tools to use anndata 0.10

#60 CameronFRWatson opened 7 months ago
3
Basic illumination update

#59 hannah413 closed 7 months ago
0
CELESTA tool wrapper

#58 CameronFRWatson closed 1 month ago
1
Background subtraction (pixel level) tool wrapper

#57 CameronFRWatson closed 4 months ago
1
Ashlar version update

#56 CameronFRWatson closed 8 months ago
4
fix for test failure related to dict object iteration

#55 luke-c-sargent closed 10 months ago
3
update CI from IUC

#54 alliecreason closed 11 months ago
0
applies the new conventions for imaging tools agreed at BioHackEU23

#53 kostrykin closed 7 months ago
9
Expose random seed parameter to user args for analytical tools

#52 CameronFRWatson opened 1 year ago
0
create galaxy-me tool suite

#51 alliecreason closed 3 months ago
0
Quant 1.5.3

#50 alliecreason closed 1 year ago
0
Mesmer refactor

#49 alliecreason closed 1 year ago
0
Update mesmer tests

#48 alliecreason closed 1 year ago
0
Changed output format to ome.tif

#47 FloWuenne closed 1 year ago
4
fix tool version token mti_utils

#46 CameronFRWatson closed 2 years ago
0
fix utils shed repo name

#45 CameronFRWatson closed 2 years ago
0
data_column for specifying input column names and tabular metadata files for tools

#44 CameronFRWatson opened 2 years ago
1
Utils overhaul

#43 CameronFRWatson closed 2 years ago
1
Remove the test example tool

#42 qiagu closed 2 years ago
0
Add aggressive OOM error detector

#41 qiagu closed 2 years ago
3