HHblits query is running time too long!

google-deepmind / alphafold

Open source code for AlphaFold 2.

Apache License 2.0

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HHblits query is running time too long! #888

Open JLHU2021 opened 10 months ago

JLHU2021 commented 10 months ago

Hello! I am running the alphafold2 (non-docker version; Miniconda) in a HPC platform (with Nvidia GPUs), predicting the structure of a protein with about 500 amino acid residues. I am sure that the hardwares is OK, including the CPU and disks. But it has been running for over 23 hours，and haven't finished the "Started HHblits query" step after staying in this step for 22 hours. Could anyone help me with this issue?! Many thanks!!! 微信图片_20240123163949

kylwein commented 9 months ago

Need more gpu allocation

JLHU2021 commented 9 months ago

Need more gpu allocation

Thank you very much!

davidecarlson commented 8 months ago

Need more gpu allocation

Note that HHblits doesn't use any GPUs, so changing the GPU allocation would have no effect here.